morrislab/protein-localization
Overview Protein localization is an annotation of the subcellular compartments that proteins are found in. This task is a multilabel classification -- proteins can be found in more than one compartment. This dataset is redistributed as part of mRNABench: https://github.com/morrislab/mRNABench Data Format Description of data columns: target: Multihot labelling of cellular components that a protein appear in.The label positions correspond to: [Cytosol, Nucleoli… See the full description on the dataset page: https://huggingface.co/datasets/morrislab/protein-localization.
Overview
Protein localization is an annotation of the subcellular compartments that proteins are found in. This task is a multilabel classification -- proteins can be found in more than one compartment.
This dataset is redistributed as part of mRNABench: https://github.com/morrislab/mRNABench
Data Format
Description of data columns:
target: Multihot labelling of cellular components that a protein appear in. The label positions correspond to:[Cytosol, Nucleoli, Microtubules, Vesicles, Centrosome, Mitochondria, Golgi apparatus, Nucleoplasm, Nuclear bodies, Endoplasmic reticulum, Nuclear speckles, Plasma membrane]cds: Binary track which reports position of first nucleotide in each codon in CDS.splice: Binary track which reports position of the 3' end of each exon, indicating splice sites.
Data Source
This dataset is a Hugging Face redistribution of the subcellar localization data from Protein Atlas (Thul, P. J. et al. 2017), which is licensed under the Creative Commons Attribution-ShareAlike 4.0 International License.
Original paper: https://www.science.org/doi/10.1126/science.aal3321 Original dataset source: https://www.proteinatlas.org/ Citation: Thul, P. J. et al. A subcellular map of the human proteome. Science 356 (2017)