kenobi/GeneLab_BPS_BenchmarkData

Dataset Card for Dataset GeneLabBPSBenchmarkData

Dataset Details

This dataset is a version of the Biological and Physical Sciences (BPS) Microscopy Benchmark Training Dataset managed by NASA and hosted on an S3 Bucket here: https://registry.opendata.aws/bps_microscopy/

Fluorescence microscopy images of individual nuclei from mouse fibroblast cells, irradiated with Fe particles or X-rays with fluorescent foci indicating 53BP1 positivity, a marker of DNA damage. These are maximum intensity projections of 9-layer microscopy Z-stacks.

Dataset Description

• —Curated by: Frank Soboczenski
• —Funded by [optional]: [More Information Needed]
• —Shared by [optional]: [More Information Needed]
• —Language(s) (NLP): [More Information Needed]
• —License: There are no restrictions on the use of this data.

Further Documentation

https://docs.google.com/document/d/e/2PACX-1vTIjUPenLxVX0stErsBbK884QMJW_Ur1mqHJ9K3KIZl3klT90cxHDppsEvz5Z6Skdu13X8tzghqyWcN/pub

Update Frequency

New fluorescence microscopy mouse fibroblast nuclei data is added whenever it is available.

Dataset Structure

GeneLabBPSBenchmarkData/<br> ├── README.md<br> └── data/<br> ├── HighEnergyIonFeNuclei/<br> │ └── .tif<br> │ └── ...<br> └── XRayirradiatedNucleiation/<br> └── .tif<br> └── ...<br>

How to Cite

Biological and Physical Sciences (BPS) Microscopy Benchmark Training Dataset was accessed on DATE from https://huggingface.co/datasets/kenobi/GeneLabBPSBenchmarkData

Publications

• —Dose, LET and Strain Dependence of Radiation-Induced 53BP1 Foci in 15 Mouse Strains Ex Vivo Introducing Novel DNA Damage Metrics by Sébastien Penninckx, Egle Cekanaviciute, Charlotte Degorre, Elodie Guiet, Louise Viger, Stéphane Lucasb, Sylvain V. Costes
• —NASA SMD AI Workshop Report by SMD Artificial Intelligence (AI) Initiative

Dataset Card Authors [optional]

Lauren Sanders (lauren.m.sanders@nasa.gov)

Dataset Card Contact

Frank Soboczenski (Frank.Soboczenski@york.ac.uk)