jackkuo/Orthoformer

Orthoformer Datasets 📌 Overview Orthoformer is a large-scale genomics dataset designed to support function-centric foundation modeling of microbial and viral genomes. Unlike conventional sequence-based models that infer biological roles from nucleotide or protein context, Orthoformer represents each genome by its orthologous group composition and abundance, treating functional units rather than sequences as the basic biological vocabulary. The dataset was… See the full description on the dataset page: https://huggingface.co/datasets/jackkuo/Orthoformer.