Datasetpublic

introvoyz041/pgc-autism

PGC Autism Spectrum Disorder — GWAS Summary Statistics Dataset Description Genome-wide association study (GWAS) summary statistics for Autism Spectrum Disorder phenotypes from the Psychiatric Genomics Consortium (PGC). Each publication is available as a separate subset (config) and can be loaded independently. Usage from datasets import load_dataset # Load a specific GWAS ds = load_dataset("OpenMed/pgc-autism", "asd2017") print(ds)… See the full description on the dataset page: https://huggingface.co/datasets/introvoyz041/pgc-autism.

sourceHugging Facecc-by-4.0updated 6mo agoView on Hugging Face

2likes266downloads

Dataset Card

PGC Autism Spectrum Disorder — GWAS Summary Statistics

![License: CC BY 4.0](https://creativecommons.org/licenses/by/4.0/)

Dataset Description

Genome-wide association study (GWAS) summary statistics for Autism Spectrum Disorder phenotypes from the Psychiatric Genomics Consortium (PGC).

Each publication is available as a separate subset (config) and can be loaded independently.

Usage

python

from datasets import load_dataset

# Load a specific GWAS
ds = load_dataset("OpenMed/pgc-autism", "asd2017")
print(ds)

List all available subsets

python

from datasets import get_dataset_config_names
print(get_dataset_config_names("OpenMed/pgc-autism"))

Subsets

Config	Phenotype	Journal	Year	PubMed	Rows
`asd2017`	Autism Spectrum Disorder	Molecular Autism	2017	28540026	—
`asd2019`	Autism Spectrum Disorder	Nature Genetics	2019	30804558	—

Data Format

All data is stored as Apache Parquet shards (10,000 rows each). Common columns:

Column	Description
`SNP` / `ID`	SNP rsID or variant identifier
`CHR`	Chromosome
`BP` / `POS`	Base-pair position (typically GRCh37/hg19)
`A1`	Effect allele
`A2`	Non-effect allele
`OR` / `BETA`	Odds ratio or effect size
`SE`	Standard error
`P`	P-value
`_source_file`	Original source filename

Column names vary between publications. Check each subset's schema.

Citation

Please cite the original publication (see PubMed links above) and acknowledge the PGC:

Data were obtained from the Psychiatric Genomics Consortium — https://pgc.unc.edu/

Terms of Use

Released under [CC BY 4.0](https://creativecommons.org/licenses/by/4.0/).

—Cite the original publication(s)
—Do not attempt to re-identify individual participants
—Comply with the PGC data use policies

Source

Last updated: April 2026