geometric-intelligence/ogbench

OgBench: Benchmarking Graph Neural Networks on Omics Data OgBench is the first benchmark suite for graph-level prediction in the n ≪ p regime characteristic of omics data, where the number of patient samples n is much smaller than the number of nodes (genes or proteins) p per graph. Datasets This repository contains four preprocessed omics graph classification datasets: Dataset Modality n p Task HERITAGE Proteomics 654 4,977 Exercise responder… See the full description on the dataset page: https://huggingface.co/datasets/geometric-intelligence/ogbench.