fabricioslv/omnimind-linnarsson-human-astrocyte-baseline
OmniMind — Linnarsson Human Brain: Astrocyte Supercluster Subset of the adult human brain single-cell atlas (Siletti et al., 2022) from CZ CELLxGENE. Source Collection: https://cellxgene.cziscience.com/collections/283d65eb-dd53-496d-adb7-7570c7caa443 Dataset: Supercluster: Astrocyte Downloaded from: https://datasets.cellxgene.cziscience.com/408cd809-01a3-44f7-a2a8-8c84e8e96dd6.h5ad Citation: Siletti et al., bioRxiv 2022; DOI: 10.1101/2022.10.12.511898… See the full description on the dataset page: https://huggingface.co/datasets/fabricioslv/omnimind-linnarsson-human-astrocyte-baseline.
OmniMind — Linnarsson Human Brain: Astrocyte Supercluster
Subset of the adult human brain single-cell atlas (Siletti et al., 2022) from CZ CELLxGENE.
Source
- Collection: https://cellxgene.cziscience.com/collections/283d65eb-dd53-496d-adb7-7570c7caa443
- Dataset:
Supercluster: Astrocyte - Downloaded from: https://datasets.cellxgene.cziscience.com/408cd809-01a3-44f7-a2a8-8c84e8e96dd6.h5ad
- Citation: Siletti et al., bioRxiv 2022; DOI: 10.1101/2022.10.12.511898
Files
astrocyte_cell_metadata.parquet— metadata for 155,025 astrocytes (17 columns).astrocyte_cluster_summary.parquet— cell counts per cluster/subcluster.astrocyte_x_umap.parquet— 3D UMAP coordinates.astrocyte_x_tsne.parquet— 3D t-SNE coordinates.astrocyte_summary.json— schema and counts.
Use
Baseline glial population for homeostatic comparison with disease states and simulations.