fabricioslv/omnimind-colab-baseline-analysis

OmniMind — Colab baseline analysis

Unified analysis outputs from the Colab run on 2026-09-02.

Datasets analyzed

1. 1.brain_organoids_four_protocols — 69,794 cells, 4 protocols.
2. 2.10x_visium_dlpfc — 47,681 Visium spots from 12 DLPFC sections.
3. 3.linnarsson_astrocyte — 155,025 human astrocytes.
4. 4.linnarsson_upper_layer_intratelencephalic — 455,006 human upper-layer cortical neurons.

Structure

• —brain_organoids/ — protocol × annotation crosstabs, QC stats, NEST score summaries.
• —dlpfc/ — per-sample stats, layer counts, layer × sample crosstab.
• —linnarsson/ — region and cluster counts, QC summaries.
• —summary/ — JSON summaries and cross-baseline observations.
• —master_index.json — index of all files.

Use

These are lightweight, analysis-ready tables derived from the original public datasets. Raw data (H5AD, RDS, zip) was not uploaded.