Datasetpublic

esholmess/CRC-ICM_HE-Subset

CRC-ICM-H&E Subset – Colorectal Cancer Immune Cell Markers (H&E Images Only) This dataset is a filtered version of the CRC-ICM-v1 dataset from Mendeley Data, containing only Hematoxylin & Eosin (H&E) stained histopathology images. Dataset Summary Source: CRC-ICM-v1 (Mendeley Data) Content: H&E-stained colorectal cancer tissue images Format: .jpg images and a metadata file (data.csv) Image Types: CT (central tumor), IM (invasive margin) Magnification: 20x The… See the full description on the dataset page: https://huggingface.co/datasets/esholmess/CRC-ICM_HE-Subset.

sourceHugging Facecc-by-4.0updated 1y agoView on Hugging Face

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Dataset Card

CRC-ICM-H&E Subset – Colorectal Cancer Immune Cell Markers (H&E Images Only)

This dataset is a filtered version of the CRC-ICM-v1 dataset from Mendeley Data, containing only Hematoxylin & Eosin (H&E) stained histopathology images.

Dataset Summary

—Source: CRC-ICM-v1 (Mendeley Data)
—Content: H&E-stained colorectal cancer tissue images
—Format: .jpg images and a metadata file (data.csv)
—Image Types: CT (central tumor), IM (invasive margin)
—Magnification: 20x

The images are suitable for tasks such as:

—Cancer tissue classification
—Segmentation
—Pretraining on medical image datasets

File Structure

—only_he_images/: Contains all the .jpg H&E images.
—data.csv: Metadata file with information on image names and annotations.

Source and License

Wang, Y. (2024), Colorectal Cancer Immune Cell Markers Dataset v1 (CRC-ICM-v1), Mendeley Data, V2, https://doi.org/10.17632/h3fhg9zr47.2 License: CC BY 4.0

This subset was prepared by esholmess and is published under the same license with attribution to the original authors.

Modifications

—Extracted only H&E images from the original dataset
—Metadata renamed as data.csv

Example Usage

python

from datasets import load_dataset

dataset = load_dataset("esholmess/crc-icm-he-subset")