einarolafsson/cross-channel-toxoplasma-from-cellmask
Cross-channel toxoplasma from cellmask dataset 3030 paired fields. images/ is the input channel, masks_pv/ the instance-labelled parasitophorous-vacuole ground truth (same stem = same field), regenerated with the promoted PV model cpsam_v2_toxo_r5. Train/test annotation: fields.csv gives name,split,n_objects for every field - 2567 train (31637 objects) / 463 test (6116 objects). The split is by well (split_by_well.csv), so no well contributes to both sides. Prepared with spaCR… See the full description on the dataset page: https://huggingface.co/datasets/einarolafsson/cross-channel-toxoplasma-from-cellmask.
Cross-channel toxoplasma from cellmask dataset
3030 paired fields. images/ is the input channel, masks_pv/ the instance-labelled parasitophorous-vacuole ground truth (same stem = same field), regenerated with the promoted PV model cpsam_v2_toxo_r5.
Train/test annotation: fields.csv gives name,split,n_objects for every field - 2567 train (31637 objects) / 463 test (6116 objects). The split is by well (split_by_well.csv), so no well contributes to both sides.
Prepared with spaCR (PyPI | conda-forge). Used to train einarolafsson/toxoplasma-from-cellmask-cpsam.