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depinwang/jinyang-gse158739-mussel-vs-shiba-v1

jinyang-gse158739-mussel-vs-shiba-v1 MUSSEL vs Shiba PSI concordance for GSE158739 — 207,612 matched events via direct pos_id matching (99.7% of MUSSEL events). Columns: mussel_/shiba_/delta_ per sample, mean_delta, median_delta, max_abs_delta, concordant_samples. Dataset Info Rows: 207612 Columns: 45 Columns Column Type Description pos_id Value('large_string') Splicing event position ID (Ensembl convention, e.g.… See the full description on the dataset page: https://huggingface.co/datasets/depinwang/jinyang-gse158739-mussel-vs-shiba-v1.

sourceHugging Facemitupdated 2mo agoView on Hugging Face
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Dataset Card

jinyang-gse158739-mussel-vs-shiba-v1

MUSSEL vs Shiba PSI concordance for GSE158739 — 207,612 matched events via direct posid matching (99.7% of MUSSEL events). Columns: mussel/shiba/delta per sample, meandelta, mediandelta, maxabsdelta, concordant_samples.

Dataset Info

  • —Rows: 207612
  • —Columns: 45

Columns

ColumnTypeDescription
pos_idValue('large_string')Splicing event position ID (Ensembl convention, e.g. SE@1@14930-15038@14829-15796)
musseleventidValue('large_string')MUSSEL event identifier (gene-based, e.g. SEENSG00000310526114930150381482915796)
shibaeventidValue('large_string')Shiba event identifier (sequential, e.g. SE_4)
musselpre1Value('float64')No description provided
shibapre1Value('float64')No description provided
deltapre1Value('float64')No description provided
musselpre2Value('float64')No description provided
shibapre2Value('float64')No description provided
deltapre2Value('float64')No description provided
musselpre3Value('float64')No description provided
shibapre3Value('float64')No description provided
deltapre3Value('float64')No description provided
musselpre4Value('float64')No description provided
shibapre4Value('float64')No description provided
deltapre4Value('float64')No description provided
musselpre5Value('float64')No description provided
shibapre5Value('float64')No description provided
deltapre5Value('float64')No description provided
musselpost1Value('float64')No description provided
shibapost1Value('float64')No description provided
deltapost1Value('float64')No description provided
musselpost2Value('float64')No description provided
shibapost2Value('float64')No description provided
deltapost2Value('float64')No description provided
musselpost3Value('float64')No description provided
shibapost3Value('float64')No description provided
deltapost3Value('float64')No description provided
musselpost4Value('float64')No description provided
shibapost4Value('float64')No description provided
deltapost4Value('float64')No description provided
musselpost5Value('float64')No description provided
shibapost5Value('float64')No description provided
deltapost5Value('float64')No description provided
musselpost6Value('float64')No description provided
shibapost6Value('float64')No description provided
deltapost6Value('float64')No description provided
musselpost7Value('float64')No description provided
shibapost7Value('float64')No description provided
deltapost7Value('float64')No description provided
mean_deltaValue('float64')Mean ΔPSI across all 12 samples
median_deltaValue('float64')Median ΔPSI across all 12 samples
maxabsdeltaValue('float64')Maximum absolute ΔPSI across all 12 samples
concordant_samplesValue('int64')Number of samples whereΔPSI≤ 0.10 (out of 12)
total_samplesValue('int64')Number of samples with non-null PSI in both tools
event_typeValue('large_string')Splicing event type (SE, MXE, FIVE, THREE, RI, AFE, ALE, MSE)

Generation Parameters

json
{
  "script_name": "01_all_event_types.py",
  "model": "MUSSEL-vs-Shiba",
  "description": "MUSSEL vs Shiba PSI concordance for GSE158739 \u2014 207,612 matched events via direct pos_id matching (99.7% of MUSSEL events). Columns: mussel_/shiba_/delta_ per sample, mean_delta, median_delta, max_abs_delta, concordant_samples.",
  "experiment_name": "jinyang-gse158739-mussel-psi",
  "hyperparameters": {},
  "input_datasets": []
}

Usage

python
from datasets import load_dataset

dataset = load_dataset("depinwang/jinyang-gse158739-mussel-vs-shiba-v1", split="train")
print(f"Loaded {len(dataset)} rows")