chintagunta85/bc2gm_test
Nineteen teams presented results for the Gene Mention Task at the BioCreative II Workshop. In this task participants designed systems to identify substrings in sentences corresponding to gene name mentions. A variety of different methods were used and the results varied with a highest achieved F1 score of 0.8721. Here we present brief descriptions of all the methods used and a statistical analysis of the results. We also demonstrate that, by combining the results from all submissions, an F score of 0.9066 is feasible, and furthermore that the best result makes use of the lowest scoring submissions. For more details, see: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2559986/ The original dataset can be downloaded from: https://biocreative.bioinformatics.udel.edu/resources/corpora/biocreative-ii-corpus/ This dataset has been converted to CoNLL format for NER using the following tool: https://github.com/spyysalo/standoff2conll
Dataset Card for bc2gm_corpus
Table of Contents
- Dataset Description
- Dataset Summary
- Supported Tasks and Leaderboards
- Languages
- Dataset Structure
- Data Instances
- Data Fields
- Data Splits
- Dataset Creation
- Curation Rationale
- Source Data
- Annotations
- Personal and Sensitive Information
- Considerations for Using the Data
- Social Impact of Dataset
- Discussion of Biases
- Other Known Limitations
- Additional Information
- Dataset Curators
- Licensing Information
- Citation Information
- Contributions
Dataset Description
Dataset Summary
[More Information Needed]
Supported Tasks and Leaderboards
[More Information Needed]
Languages
[More Information Needed]
Dataset Structure
Data Instances
[More Information Needed]
Data Fields
id: Sentence identifier.tokens: Array of tokens composing a sentence.ner_tags: Array of tags, where0indicates no disease mentioned,1signals the first token of a disease and2the subsequent disease tokens.
Data Splits
[More Information Needed]
Dataset Creation
Curation Rationale
[More Information Needed]
Source Data
Initial Data Collection and Normalization
[More Information Needed]
Who are the source language producers?
[More Information Needed]
Annotations
Annotation process
[More Information Needed]
Who are the annotators?
[More Information Needed]
Personal and Sensitive Information
[More Information Needed]
Considerations for Using the Data
Social Impact of Dataset
[More Information Needed]
Discussion of Biases
[More Information Needed]
Other Known Limitations
[More Information Needed]
Additional Information
Dataset Curators
[More Information Needed]
Licensing Information
[More Information Needed]
Citation Information
[More Information Needed]
Contributions
Thanks to @mahajandiwakar for adding this dataset.