chansigit/transmap-layouts

TransMap gene layouts Canonical gene-to-pixel layouts used by the TransMap single-species and multi-species experiments. Single-species layouts The repository contains 65 canonical HDF5 layouts for five datasets: ds_lung ds_breast ds_cite_seq_pbmc ds_gut_fetal ds_lung_fetal_donor Each dataset has a 48 x 48 layout over 2,000 HVGs for four layout families: one TorchGW layout: layout_torchgw_snn_k7_48x48.h5 one IGTD layout: layout_igtd_linear_abs_seed1_48x48.h5… See the full description on the dataset page: https://huggingface.co/datasets/chansigit/transmap-layouts.