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araag2/TREC_Precision-Medicine

TREC Precision Medicine (2017, 2018 and 2019) Links Homepage: TREC Paper: 2017 / 2018 / 2019 / 2020 Contact (Original Authors): Kirk Roberts (Kirk.Roberts@uth.tmc.edu ) Contact (Curator): Artur Guimarães (artur.guimas@gmail.com) Dataset Summary This track focused on oncologists looking for evidence-based treatment literature and clinical trials. Data Instances Source Format { "query_id":"1"… See the full description on the dataset page: https://huggingface.co/datasets/araag2/TREC_Precision-Medicine.

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Dataset Card

TREC Precision Medicine (2017, 2018 and 2019)

Links
Homepage:TREC
Paper:2017 / 2018 / 2019 / 2020
Contact (Original Authors):Kirk Roberts (Kirk.Roberts@uth.tmc.edu )
Contact (Curator):Artur Guimarães (artur.guimas@gmail.com)

Dataset Summary

This track focused on oncologists looking for evidence-based treatment literature and clinical trials.

Data Instances

Source Format
json
{
    "query_id":"1",
    "disease":"melanoma",
    "gene":"BRAF (E586K)",
    "demographic":"64-year-old female",
    "doc_id":"NCT00001685",
    "relevance":0,
    "iteration":"0"
}

Data Fields

Source Format

TO:DO

Data Splits

TO:DO

Additional Information

Dataset Curators

Original Paper
  • —Kirk Roberts - School of Biomedical Informatics, The University of Texas Health Science Center, Houston, TX Lister Hill National Center for Biomedical Communications, U.S. National Library of Medicine, Bethesda, MD
  • —Dina Demner-Fushman - Lister Hill National Center for Biomedical Communications, U.S. National Library of Medicine, Bethesda, MD
  • —Ellen M. Voorhees - Information Technology Laboratory, National Institute of Standards and Technology, Gaithersburg, MD
  • —William R. Hersh and Steven Bedrick - Department of Medical Informatics & Clinical Epidemiology, Oregon Health and Science University, Portland, OR
  • —Alexander J. Lazar - Departments of Pathology & Genomic Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX
  • —Shubham Pant - Department of Investigational Cancer Therapeutics, The University of Texas MD Anderson Cancer Center, Houston, TX
Huggingface Curator
  • —Artur Guimarães (artur.guimas@gmail.com) - INESC-ID / University of Lisbon - Instituto Superior Técnico

Licensing Information

CC BY-SA 4.0

Citation Information

bibtex
@inproceedings{roberts2017overview,
  title={Overview of the TREC 2017 precision medicine track},
  author={Roberts, Kirk and Demner-Fushman, Dina and Voorhees, Ellen M and Hersh, William R and Bedrick, Steven and Lazar, Alexander J and Pant, Shubham},
  booktitle={The... text REtrieval conference: TREC. Text REtrieval Conference},
  volume={26},
  pages={https--trec},
  year={2017}
}

@inproceedings{roberts2018overview,
  title={Overview of the TREC 2018 Precision Medicine Track},
  author={Roberts, Kirk and Demner-Fushman, Dina and Voorhees, Ellen M and Hersh, William R and Bedrick, Steven and Lazar, Alexander J},
  booktitle={27th Text REtrieval Conference, TREC 2018},
  year={2018}
}

@inproceedings{roberts2019overview,
  title={Overview of the TREC 2019 precision medicine track},
  author={Roberts, Kirk and Demner-Fushman, Dina and Voorhees, Ellen M and Hersh, William R and Bedrick, Steven and Lazar, Alexander J and Pant, Shubham and Meric-Bernstam, Funda},
  booktitle={The... Text REtrieval Conference: TREC. Text REtrieval Conference},
  volume={1250},
  pages={https--trec},
  year={2019}
}

@inproceedings{roberts2020overview,
  title={Overview of the TREC 2020 precision medicine track},
  author={Roberts, Kirk and Demner-Fushman, Dina and Voorhees, Ellen M and Bedrick, Steven and Hersh, William R},
  booktitle={The... text REtrieval conference: TREC. Text REtrieval Conference},
  volume={1266},
  pages={https--trec},
  year={2020}
}

Contributions

Thanks to araag2 for adding this dataset.

araag2/TREC_Precision-Medicine · CoolFace