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aparulsarma/openenv-pathway-analysis-env

OpenEnv Pathway Analysis Environment This repository packages pathway_analysis_env for Hugging Face Hub publication. Contents envs/pathway_analysis_env/ environment code reproducible GEO benchmark inputs for 3 tasks task expansion scripts: create_geo_task.py append_task_to_manifest.py Run locally uv sync --all-extras PYTHONPATH=src:envs uv run python envs/pathway_analysis_env/scripts/run_agent_eval_suite.py --manifest… See the full description on the dataset page: https://huggingface.co/datasets/aparulsarma/openenv-pathway-analysis-env.

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OpenEnv Pathway Analysis Environment

This repository packages pathway_analysis_env for Hugging Face Hub publication.

—envs/pathway_analysis_env/ environment code
—reproducible GEO benchmark inputs for 3 tasks
—task expansion scripts:
—create_geo_task.py
—append_task_to_manifest.py

Run locally

bash

uv sync --all-extras
PYTHONPATH=src:envs uv run python envs/pathway_analysis_env/scripts/run_agent_eval_suite.py   --manifest envs/pathway_analysis_env/data/eval_manifest_geo3.json

Note on Spaces

Publishing as a Docker Space from a free user namespace may require Hugging Face PRO. This repo is ready for maintainers to deploy under an entitled namespace.