Datasetpublic

SubstrateCommons/winther-g6-axons

SubstrateCommons/winther-g6-axons Replay packs (.rpk) built with dmipy_sim: one converged Monte-Carlo walk each, stored so any acquisition can be replayed on it. Load one with ReplayPack.load("hf://SubstrateCommons/winther-g6-axons/<path>"); the manifest (manifest.json) holds the sha256 every load is checked against. This file is rendered from the manifest by dmipy_sim.replay.publish. Substrate winther/G6/axon06 box: 11.5259 × 10.405 × 154.766 µm boundary: open… See the full description on the dataset page: https://huggingface.co/datasets/SubstrateCommons/winther-g6-axons.

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Dataset Card

SubstrateCommons/winther-g6-axons

Replay packs (.rpk) built with dmipy_sim: one converged Monte-Carlo walk each, stored so any acquisition can be replayed on it. Load one with ReplayPack.load("hf://SubstrateCommons/winther-g6-axons/<path>"); the manifest (manifest.json) holds the sha256 every load is checked against. This file is rendered from the manifest by dmipy_sim.replay.publish.

Substrate

winther/G6/axon06

—box: 11.5259 × 10.405 × 154.766 µm
—boundary: open, open, open

pool	D (m²/s)	water fraction
extra	1.7e-09	0
intra	1.7e-09	1
myelin	0	0.4

Packs

id	duration	walkers	bands	channels	floor	size	commit	path
`winther/G6/axon06`	36 ms	52000	93	positions, boundarylocaltime, compartment, susceptibilitygrid, susceptibilitypath	0.0063	147.3 MB	807e35c7	`packs/axon06.rpk`
`winther/G6/axon12`	36 ms	52000	93	positions, boundarylocaltime, compartment, susceptibilitygrid, susceptibilitypath	0.00488	82.4 MB	807e35c7	`packs/axon12.rpk`
`winther/G6/axon13`	36 ms	52000	93	positions, boundarylocaltime, compartment, susceptibilitygrid, susceptibilitypath	0.0087	71.6 MB	807e35c7	`packs/axon13.rpk`
`winther/G6/axon14`	36 ms	52000	93	positions, boundarylocaltime, compartment, susceptibilitygrid, susceptibilitypath	0.00471	104.1 MB	807e35c7	`packs/axon14.rpk`
`winther/G6/axon15`	36 ms	52000	93	positions, boundarylocaltime, compartment, susceptibilitygrid, susceptibilitypath	0.00475	104.1 MB	807e35c7	`packs/axon15.rpk`
`winther/G6/axon18`	36 ms	52000	93	positions, boundarylocaltime, compartment, susceptibilitygrid, susceptibilitypath	0.00579	104.1 MB	807e35c7	`packs/axon18.rpk`
`winther/G6/axon22`	36 ms	52000	93	positions, boundarylocaltime, compartment, susceptibilitygrid, susceptibilitypath	0.00574	104.1 MB	807e35c7	`packs/axon22.rpk`
`winther/G6/axon24`	36 ms	52000	93	positions, boundarylocaltime, compartment, susceptibilitygrid, susceptibilitypath	0.00848	71.6 MB	807e35c7	`packs/axon24.rpk`
`winther/G6/axon25`	36 ms	52000	93	positions, boundarylocaltime, compartment, susceptibilitygrid, susceptibilitypath	0.0094	233.9 MB	807e35c7	`packs/axon25.rpk`
`winther/G6/axon26`	36 ms	52000	93	positions, boundarylocaltime, compartment, susceptibilitygrid, susceptibilitypath	0.00546	147.3 MB	807e35c7	`packs/axon26.rpk`
`winther/G6/axon27`	36 ms	52000	93	positions, boundarylocaltime, compartment, susceptibilitygrid, susceptibilitypath	0.0046	82.4 MB	807e35c7	`packs/axon27.rpk`
`winther/G6/axon31`	36 ms	52000	93	positions, boundarylocaltime, compartment, susceptibilitygrid, susceptibilitypath	0.007	82.4 MB	807e35c7	`packs/axon31.rpk`
`winther/G6/axon32`	36 ms	52000	93	positions, boundarylocaltime, compartment, susceptibilitygrid, susceptibilitypath	0.0043	233.9 MB	807e35c7	`packs/axon32.rpk`
`winther/G6/axon34`	36 ms	52000	93	positions, boundarylocaltime, compartment, susceptibilitygrid, susceptibilitypath	0.00551	82.4 MB	807e35c7	`packs/axon34.rpk`
`winther/G6/axon38`	36 ms	52000	93	positions, boundarylocaltime, compartment, susceptibilitygrid, susceptibilitypath	0.00819	82.4 MB	807e35c7	`packs/axon38.rpk`
`winther/G6/axon40`	36 ms	52000	93	positions, boundarylocaltime, compartment, susceptibilitygrid, susceptibilitypath	0.0081	406.9 MB	807e35c7	`packs/axon40.rpk`
`winther/G6/axon41`	36 ms	52000	93	positions, boundarylocaltime, compartment, susceptibilitygrid, susceptibilitypath	0.00577	82.4 MB	807e35c7	`packs/axon41.rpk`
`winther/G6/axon43`	36 ms	52000	93	positions, boundarylocaltime, compartment, susceptibilitygrid, susceptibilitypath	0.0069	147.3 MB	807e35c7	`packs/axon43.rpk`
`winther/G6/axon45`	36 ms	52000	93	positions, boundarylocaltime, compartment, susceptibilitygrid, susceptibilitypath	0.0059	71.6 MB	807e35c7	`packs/axon45.rpk`
`winther/G6/axon46`	36 ms	52000	93	positions, boundarylocaltime, compartment, susceptibilitygrid, susceptibilitypath	0.00543	147.3 MB	807e35c7	`packs/axon46.rpk`
`winther/G6/axon47`	36 ms	52000	93	positions, boundarylocaltime, compartment, susceptibilitygrid, susceptibilitypath	0.00741	82.4 MB	807e35c7	`packs/axon47.rpk`
`winther/G6/axon48`	36 ms	52000	93	positions, boundarylocaltime, compartment, susceptibilitygrid, susceptibilitypath	0.00771	71.6 MB	807e35c7	`packs/axon48.rpk`
`winther/G6/axon49`	36 ms	52000	93	positions, boundarylocaltime, compartment, susceptibilitygrid, susceptibilitypath	0.00646	82.4 MB	807e35c7	`packs/axon49.rpk`
`winther/G6/axon50`	36 ms	52000	93	positions, boundarylocaltime, compartment, susceptibilitygrid, susceptibilitypath	0.0044	147.3 MB	807e35c7	`packs/axon50.rpk`
`winther/G6/axon51`	36 ms	52000	93	positions, boundarylocaltime, compartment, susceptibilitygrid, susceptibilitypath	0.00406	82.4 MB	807e35c7	`packs/axon51.rpk`
`winther/G6/axon52`	36 ms	52000	93	positions, boundarylocaltime, compartment, susceptibilitygrid, susceptibilitypath	0.00923	233.9 MB	807e35c7	`packs/axon52.rpk`
`winther/G6/axon53`	36 ms	52000	93	positions, boundarylocaltime, compartment, susceptibilitygrid, susceptibilitypath	0.00681	82.4 MB	807e35c7	`packs/axon53.rpk`
`winther/G6/axon54`	36 ms	52000	93	positions, boundarylocaltime, compartment, susceptibilitygrid, susceptibilitypath	0.00513	71.6 MB	807e35c7	`packs/axon54.rpk`
`winther/G6/axon08`	36 ms	52000	93	positions, boundarylocaltime, compartment, susceptibilitygrid, susceptibilitypath	0.00569	71.6 MB	846ffb35	`packs/axon08.rpk`

Citation

—Winther et al., Susceptibility-induced internal gradients reveal axon morphology and cause anisotropic effects in the diffusion-weighted MRI signal, Sci Rep 14:29636 (2024), doi:10.1038/s41598-024-79043-5; morphology dataset resources.drcmr.dk (CC-BY-4.0)