SIRIS-Lab/AIObioEnts-v0.0.1-model_files
AIObioEnts model files NOTE: these models are only compatible with the AIObioEnts v0.0.1 This dataset contains the model files for AIObioEnts, trained using AIONER with 4 different pre-trained models: BiomedBERT-base pre-trained on abstracts from PubMed; the best-performing model reported in the original AIONER paper BiomedBERT-base pre-trained on both abstracts from PubMed and full-texts articles from PubMedCentral BioLinkBERT-base BioLinkBERT large for the identification of… See the full description on the dataset page: https://huggingface.co/datasets/SIRIS-Lab/AIObioEnts-v0.0.1-model_files.
AIObioEnts model files
NOTE: these models are only compatible with the **AIObioEnts v0.0.1**
This dataset contains the model files for AIObioEnts, trained using AIONER with 4 different pre-trained models:
- BiomedBERT-base pre-trained on abstracts from PubMed; the best-performing model reported in the original AIONER paper
- BiomedBERT-base pre-trained on both abstracts from PubMed and full-texts articles from PubMedCentral
- BioLinkBERT-base
- BioLinkBERT large
for the identification of core biomedical entities—gene, disease, cell line, chemical, species, variant— in textual data, in addition to the models fine-tuned with selected entites from the AnatEM corpus—cell component, tissue, organ, multi-tissue structure, cancer.