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PleIAs/Medical-Commons

Medical-Commons Medical-Commons is the largest dataset of medical content under free licenses or open data program collected by Pleias. It includes three different collection: International scientific collection of 2M articles from OpenAlex. French scientific collection of XM articles, reports and PhD theses from French institutional repositories. Administration collection from health and medical agencies, for now limited to France but with a planned Europe-wide expansion.… See the full description on the dataset page: https://huggingface.co/datasets/PleIAs/Medical-Commons.

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Dataset Card

Medical-Commons

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Medical-Commons is the largest dataset of medical content under free licenses or open data program collected by Pleias.

It includes three different collection:

  • —International scientific collection of 2M articles from OpenAlex.
  • —French scientific collection of XM articles, reports and PhD theses from French institutional repositories.
  • —Administration collection from health and medical agencies, for now limited to France but with a planned Europe-wide expansion.

The repositories give access to the complete available metadata as well as a sample of ressources.

OpenAlex Collection Statistics

Overview

This section presents detailed statistics for the OpenAlex collection within the Medical-Commons dataset. This international scientific collection represents just one of the three collections in Medical-Commons, containing 2.6 million medical articles under free licenses or open data programs.

OpenAlex Collection Statistics

MetricValue (OpenAlex Collection Only)
Total Papers2,623,673
Total Words21,328,187,404
Average Words per Paper8,129.1

Top 10 Medical Subfields in OpenAlex Collection

SubfieldPapers in OpenAlex% of OpenAlex TotalWords in OpenAlexAvg Words per Paper
Epidemiology239,3079.12%2,104,074,7988,792.5
Public Health, Environmental and Occupational Health237,0529.04%1,993,696,4848,410.0
Surgery218,5698.33%1,562,899,0387,150.0
Pulmonary and Respiratory Medicine188,0537.17%1,485,806,2997,901.0
Oncology186,5837.11%1,355,465,0287,265.0
Infectious Diseases162,4016.19%1,362,069,8068,386.5
Physiology147,7035.63%1,308,562,7058,859.4
Cardiology and Cardiovascular Medicine112,9624.31%969,602,0068,583.4
Radiology, Nuclear Medicine and Imaging105,8464.03%928,390,3218,771.1
Pediatrics, Perinatology and Child Health102,5183.91%764,365,8957,455.9

OpenAlex Collection Distribution Visualization

<img src="./openalex_stats.png" width="600" alt="OpenAlex Subfields Distribution">

Health French Open Administrative Data

This is a collection of diverse health and medical related documents (mostly PDFs and webpages, but also some docx, xml, etc) that come from French gouvernment public websites.

CatégorieDocumentsMotsLargest Contributor
Sécurité Sociale et Soutien183 37098 154 084forum-assures.ameli.fr
Services d'Information sur les Addictions113 14048 008 481alcool-info-service.fr
Institutions et Agences Médicales100 760189 827 776ansm.sante.fr
Sujets de Santé Spécialisés91 186122 716 315e-cancer.fr
Portails Gouvernementaux de Santé62 026250 630 040sante.gouv.fr
Total550 482709 336 696-

<img src="./documents.png" width="800" alt="% by number of documents"> <img src="./mots.png" width="800" alt="% by number of words">

A sample of the PDFs that can be found in this collection is present in the hautconseilsante_publique folder.

French Health PhD Thesis/Specialized publications

This collection contains a total of 383 622 publicly available French thesis and specialized articles in health and medicine, coming from public repositories like HAL, theses.fr, and others.

We can find in the top 10 laboratories and instituions the following:

  • —Institut de Recherche Interdisciplinaire de Grenoble [Grenoble]
  • —Bordeaux Population Health [Bordeaux]
  • —Unité Mixte de Recherche sur les Herbivores - UMR 1213 [Clermont-Ferrand]
  • —Physiologie & Médecine Expérimentale du Cœur et des Muscles [U 1046] [Montpellier]
  • —Institut de Recherche en Santé, Environnement et Travail [Rennes]
  • —Physiologie, Environnement et Génétique pour l'Animal et les Systèmes d'Élevage [Rennes]
  • —Génétique Physiologie et Systèmes d'Élevage [Toulouse]
  • —Science et Technologie du Lait et de l'Œuf [Rennes]
  • —Centre de Recherche en Épidémiologie et Santé des Populations [Paris]
  • —Centre de Recherche des Cordeliers [Paris]