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PDBEurope/protein_structure_NER_model_v2.1

Overview This data was used to train model: https://huggingface.co/PDBEurope/BiomedNLP-PubMedBERT-ProteinStructure-NER-v2.1 There are 20 different entity types in this dataset: "bond_interaction", "chemical", "complex_assembly", "evidence", "experimental_method", "gene", "mutant", "oligomeric_state", "protein", "protein_state", "protein_type", "ptm", "residue_name", "residue_name_number","residue_number", "residue_range", "site", "species", "structure_element"… See the full description on the dataset page: https://huggingface.co/datasets/PDBEurope/protein_structure_NER_model_v2.1.

sourceHugging Facemitupdated 2y agoView on Hugging Face
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94e6a2f3y ago

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58bece13y ago

renaming BioC XML files to show PMC ID as file name and to be able to distinguish between raw and annotated XML; add folder with JSON version of annotated BioC

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aa647b93y ago

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