MichelNivard/proteinLM-mixed-pretraining-v1
Pretraining mix for Protein language models In order to construct a solid pre-training data mixture for protein language models we sample a mix of proteins from 3 sources: MG_Prot50 (https://huggingface.co/datasets/tattabio/OMG_prot50): meta-genomic proteins created by clustering the Open MetaGenomic dataset (OMG) at 50% sequence identity. UniRef50: UniProt proteins from across all species clustered to 50% sequences identity, downloaded form UniProt on 31th of March 2025… See the full description on the dataset page: https://huggingface.co/datasets/MichelNivard/proteinLM-mixed-pretraining-v1.
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