Datasetpublicgated

MahmoodLab/hest

Model Card for HEST-1k What is HEST-1k? A collection of 1,276 spatial transcriptomic profiles, each linked and aligned to a Whole Slide Image (with pixel size < 1.15 µm/px) and metadata. HEST-1k was assembled from 180 public and internal cohorts encompassing: 26 organs 2 species (Homo Sapiens and Mus Musculus) 398 cancer samples from 25 cancer types. HEST-1k processing enabled the identification of >1.5 million expression/morphology pairs and >76 million… See the full description on the dataset page: https://huggingface.co/datasets/MahmoodLab/hest.

sourceHugging Facecc-by-nc-sa-4.0updated 8mo agoView on Hugging Face

107likes35kdownloads

root

dircellvit_seg/

dirmetadata/

dirpatches/

dirpatches_vis/

dirpixel_size_vis/

dirspatial_plots/

dirst/

dirthumbnails/

dirtissue_seg/

dirtranscripts/

dirwsis/

dirxenium_seg/

file.gitattributes132 KBdownload

filefig1_preview.jpg257 KBdownload

filefig1a.jpg93 KBdownload

filefig1a.png261 KBdownload

fileHEST_v1_1_0.csv523 KBdownload

fileHEST_v1_1_1.csv517 KBdownload

fileHEST_v1_2_0.csv527 KBdownload

fileHEST_v1_2_1.csv527 KBdownload

fileHEST_v1_3_0.csv541 KBdownload

filehest.py2 KBdownload

filehuman_gene_db.parquet8.1 MBdownload

fileREADME.md7 KBdownload

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