LiteFold/human-proteome-wide-msa
Human Proteome ColabFold MSAs This dataset contains ColabFold/MMseqs2 multiple sequence alignments and AlphaFold 3 JSON inputs for the human proteome query set. Contents a3m/shard-*/: one A3M file per protein accession, sharded to stay below repository directory file limits. af3_json/shard-*/: one AlphaFold 3 JSON file per protein accession, sharded to stay below repository directory file limits. manifest.tsv: tab-separated index with accession, metadata… See the full description on the dataset page: https://huggingface.co/datasets/LiteFold/human-proteome-wide-msa.
Human Proteome ColabFold MSAs
This dataset contains ColabFold/MMseqs2 multiple sequence alignments and AlphaFold 3 JSON inputs for the human proteome query set.
Contents
a3m/shard-*/: one A3M file per protein accession, sharded to stay below repository directory file limits.af3_json/shard-*/: one AlphaFold 3 JSON file per protein accession, sharded to stay below repository directory file limits.manifest.tsv: tab-separated index with accession, metadata, sequence, relative file paths, and file sizes.manifest.jsonl: JSON Lines version of the same index.human_proteome_full.fasta: input FASTA used for the search.
Counts
- Proteins: 18519
- A3M files: 18519
- AF3 JSON files: 18519
- Total A3M bytes: 105185327465
- Total AF3 JSON bytes: 106832108606
Generation
Generated with ColabFold colabfold_search using MMseqs2 GPU search, UniRef30 2023-02, and ColabFold environmental database 2021-08.