Datasetpublic

ClarusC64/ABX-RM-004_porin_loss_synchronization-v0.1

ABX-RM-004 Porin Loss Synchronization Purpose Detect a coordinated shift toward low porin states across the population before MIC shifts. Core pattern low_porin_frac rises porin_cv drops permeability_index_rel drops mic_cefepime_mg_L stays near baseline during the shift mic_cefepime_mg_L rises later Files data/train.csv data/test.csv scorer.py Schema Each row is one timepoint in a within strain series. Required columns row_id series_id timepoint_h organism strain_id porin_marker… See the full description on the dataset page: https://huggingface.co/datasets/ClarusC64/ABX-RM-004_porin_loss_synchronization-v0.1.

sourceHugging Facemitupdated 8mo agoView on Hugging Face

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ABX-RM-004 Porin Loss Synchronization

Purpose

Detect a coordinated shift toward low porin states across the population before MIC shifts.

Core pattern

—lowporinfrac rises
—porin_cv drops
—permeabilityindexrel drops
—miccefepimemg_L stays near baseline during the shift
—miccefepimemg_L rises later

Files

—data/train.csv
—data/test.csv
—scorer.py

Schema

Each row is one timepoint in a within strain series.

Required columns

—row_id
—series_id
—timepoint_h
—organism
—strain_id
—porin_marker
—porinmeanrel
—porin_cv
—lowporinfrac
—permeabilityindexrel
—miccefepimemg_L
—media
—assay_method
—source_type
—porinsyncsignal
—earliestporinsync

Labels

—porinsyncsignal
—1 for rows at or after the first confirmed synchronization point

—earliestporinsync
—1 only for the first detected synchronization row in that series

Scorer logic in v1

—baseline is timepoint 0
—candidate synchronization event
—lowporinfrac rises by 0.30 or more
—porin_cv drops by 0.15 or more
—permeabilityindexrel drops by 20 percent or more
—MIC during the shift no more than 2x baseline
—exclude spike then snapback artifacts
—confirmation
—later MIC reaches at least 4x baseline

Evaluation

Run

—python scorer.py --path data/test.csv