Datasetpublic

ClarusC64/ABX-RM-001_esbl_hyperproduction_spike-v0.1

ABX-RM-001 ESBL Hyperproduction Spike Purpose Detect a surge in beta lactamase activity that occurs before the ceftriaxone MIC shifts into a clear resistant range. Core pattern beta_lactamase_activity_rel rises sharply mic_ceftriaxone_mg_L stays near baseline at the spike moment mic_ceftriaxone_mg_L rises later Files data/train.csv data/test.csv scorer.py Schema Each row is one timepoint in a within strain series. Required columns row_id series_id timepoint_h organism strain_id… See the full description on the dataset page: https://huggingface.co/datasets/ClarusC64/ABX-RM-001_esbl_hyperproduction_spike-v0.1.

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Dataset Card

ABX-RM-001 ESBL Hyperproduction Spike

Purpose

Detect a surge in beta lactamase activity that occurs before the ceftriaxone MIC shifts into a clear resistant range.

Core pattern

—betalactamaseactivity_rel rises sharply
—micceftriaxonemg_L stays near baseline at the spike moment
—micceftriaxonemg_L rises later

Files

—data/train.csv
—data/test.csv
—scorer.py

Schema

Each row is one timepoint in a within strain series.

Required columns

—row_id
—series_id
—timepoint_h
—organism
—strain_id
—blagenefamily
—blacopynumber_rel
—betalactamaseactivity_rel
—micceftriaxonemg_L
—micmeropenemmg_L
—media
—assay_method
—source_type
—hyperproduction_signal
—earliest_hyperproduction

Labels

—hyperproduction_signal
—1 for rows at or after the first confirmed hyperproduction spike

—earliest_hyperproduction
—1 only for the first detected spike row in that series

Scorer logic in v1

—baseline is timepoint 0
—candidate spike
—activity fold increase at least 4x vs baseline
—MIC fold at spike no more than 2x vs baseline
—not a spike and snapback artifact
—confirmation
—later MIC reaches at least 4x baseline

Evaluation

Run

—python scorer.py --path data/test.csv