BrentLab/barkai_compendium

Barkai Compendium This collects the ChEC-seq data from the following GEO series: GSE179430 GSE209631 GSE222268 The metadata for each is parsed out from the SraRunTable, or in the case of GSE222268, the NCBI series matrix file (the genotype isn't in the SraRunTable) The Barkai lab refers to this set as their binding compendium. The genotypes for GSE222268 are not clear enough to me currently to parse well. Accessing Data The examples below require the HuggingFace… See the full description on the dataset page: https://huggingface.co/datasets/BrentLab/barkai_compendium.