singlecell/jiggle-physics

Add SegFormer body parsing to /jiggle/preprocess

Pose: include foot landmarks (heels + toes) so we can rig feet

Pose: detect 13 landmarks (full body) for the auto-rig

Phase 1: add /jiggle/preprocess endpoint; retire reconstruction.py

Replace SAM2 with geometric ellipses for anatomy regions

SAM2: pick mask by highest IoU within size range, not smallest

Add bbox prompts alongside click points for SAM2

Stringify landmark dict keys before pose response

Fix SAM2 mask selection + pin MediaPipe to keep solutions API

Make SAM2 mask indexing shape-agnostic

Drop reshaped_input_sizes arg from post_process_masks

Fix SAM2 processor 4-level input + adjusted output indexing

Monkey-patch gradio.routes.App.create_app to inject our routes

Own FastAPI app, mount Gradio onto it

Disable Gradio 5 SSR: Node.js layer was intercepting GET requests

Promote /jiggle/* routes ahead of Gradio's catch-all SPA route

Fix ZeroGPU detection: split @spaces.GPU from route decorators

Move all endpoints from /api/ to /jiggle/ prefix; health uses GET

Revert to demo.app approach: gr.mount_gradio_app breaks ZeroGPU

Restructure: FastAPI-first with gr.mount_gradio_app to fix route priority

Rename health endpoint to /api/jiggle-health to avoid HF infrastructure interception

Move ping endpoint to /status to avoid Gradio /api/ namespace entirely

Rename health endpoint to /api/ping to avoid Gradio reserved path

Simplify health endpoint: robust exception handling, os.path cache check

Fix /api/health: POST instead of GET to bypass Gradio SPA catch-all

Enhance /api/health with model warm/cached status

Add per-file download progress + elapsed-time logging to SAM2 init

Add two-photo workflow: MediaPipe pose detection + /api/pose endpoint

Add /api/logs endpoint and per-step print logging for SAM2 progress

Prefix API routes with /api/ to avoid Gradio catch-all interception

Fix: spaces.GPU requires sync def, not async def

Fix: Gradio 5.49.1 SDK (ZeroGPU requires Gradio), no Gradio in requirements

Switch to Docker SDK — clean FastAPI + ZeroGPU, no Gradio conflict

Fix: bump gradio to 5.x for huggingface_hub compatibility

Initial backend