saifmed/medical-systematic-review-assistant

Medical Systematic Review Assistant

Professional Streamlit app for supporting systematic review workflows.

Main features

• —Default interface language: English
• —Arabic/English interface switch
• —Protocol & registration page
• —PICO and eligibility criteria
• —Smart Search using PubMed, Europe PMC, OpenAlex, Crossref and ClinicalTrials.gov
• —Hidden NCBIEMAIL and NCBIAPI_KEY via Hugging Face Secrets
• —CSV and PDF article upload
• —Records management and deduplication
• —Title/abstract screening
• —Full-text screening with exclusion reasons
• —Data extraction table
• —Risk of bias / quality appraisal table
• —PRISMA-style summary and PRISMA 2020 checklist
• —Final Word report download
• —CSV/JSON exports
• —AI Scientific Quality Check using Gemini/OpenAI when available
• —Built-in scientific assessment fallback when external AI is unavailable

Optional Hugging Face Secrets

Add these in Settings → Secrets:

NCBI_EMAIL=your-email@example.com
NCBI_API_KEY=your-ncbi-key
GEMINI_API_KEY=your-gemini-key
GEMINI_MODEL=gemini-2.5-flash
OPENAI_API_KEY=your-openai-key
OPENAI_MODEL=gpt-4o-mini

The app hides NCBI fields from users and reads them from Secrets.

Deployment

Use Docker Space on Hugging Face and upload:

• —app.py
• —requirements.txt
• —README.md
• —Dockerfile