mgbam/Synthetic_Biology

GENESIS-AI — Synthetic Biology Deep Research (Hugging Face Space)

A production-grade, safety-first agentic research Space for high-level literature synthesis in synthetic biology. Integrates OpenAI Deep Research + Agents SDK, optional Gemini/DeepSeek-compatible models for summaries, and domain tools (UMLS/BioPortal/NCBI/PDBe). No wet‑lab/operational protocols are generated.

Deploy on Spaces

1) Create a new Space (SDK: Gradio). 2) Upload this zip. 3) Add secrets in Space settings matching .env.example. 4) Run — open the Research tab.

Local Dev

python -m venv .venv && source .venv/bin/activate
pip install -r requirements.txt
cp .env.example .env  # fill values
python app.py

Safety

• —The app refuses to output step-by-step lab instructions or growth conditions.
• —Use this for high-level literature review, synthesis, citations, and knowledge graphs only.