sequences
bacbench-antibiotic-resistance-protein-sequences
Dataset for antibiotic resistance prediction from whole-bacterial genomes (protein sequences)
A dataset of 25,032 bacterial genomes across 39 species with antimicrobial resistance labels.
The genome protein sequences have been extracted from GenBank. Each row contains whole bacterial genome, with spaces
separating different contigs present in the genome.
The antimicrobial resistance labels have been extracted from Antibiotic Susceptibility Test (AST) Browser, accessed 23 Oct, 2024.)… See the full description on the dataset page: https://huggingface.co/datasets/macwiatrak/bacbench-antibiotic-resistance-protein-sequences.carbon-cpu-enriched-sequences
carbon-cpu-enriched-sequences
A CPU-enriched subset of the carbon pretraining corpus (eukaryote_generator), combining original source fields with normalized sequences
and row-level features for quality analysis, GPU enrichment and embedding generation.
Information of Features
Feature
Type
Description
record_id
string
NCBI Identifier linking the row back to the source genomic record. It provides the primary record-level identity.
begin_of_sequence… See the full description on the dataset page: https://huggingface.co/datasets/AINovice2005/carbon-cpu-enriched-sequences.carbon-cpu-enriched-sequences-sampledbacbench-antibiotic-resistance-protein-sequences
Dataset for antibiotic resistance prediction from whole-bacterial genomes (protein sequences)
A dataset of 25,032 bacterial genomes across 39 species with antimicrobial resistance labels.
The genome protein sequences have been extracted from GenBank. Each row contains whole bacterial genome, with spaces
separating different contigs present in the genome.
The antimicrobial resistance labels have been extracted from Antibiotic Susceptibility Test (AST) Browser, accessed 23 Oct, 2024.)… See the full description on the dataset page: https://huggingface.co/datasets/mbafca2/bacbench-antibiotic-resistance-protein-sequences.sabdab_joint_sequences_uniprotsequences_only_correct_V8