rosettacommons
SAbDab_raw
All raw data from The Structural Antibody Database (SAbDab)
Quickstart Usage
Install HuggingFace Datasets package
Each subset can be loaded into python using the Huggingface datasets library.
First, from the command line install the datasets library
$ pip install datasets
Optionally set the cache directory, e.g.
$ HF_HOME=${HOME}/.cache/huggingface/
$ export HF_HOME
then, from within python load the datasets library
>>> import datasets… See the full description on the dataset page: https://huggingface.co/datasets/RosettaCommons/SAbDab_raw.MIP
Microbiome Immunity Project: Protein Universe
~200,000 predicted structures for diverse protein sequences from 1,003
representative genomes across the microbial tree of life and annotate
them functionally on a per-residue basis.
Quickstart Usage
Install HuggingFace Datasets package
Each subset can be loaded into python using the Huggingface datasets library.
First, from the command line install the datasets library
$ pip install datasets
Optionally set the… See the full description on the dataset page: https://huggingface.co/datasets/RosettaCommons/MIP.ProteinMPNN
Curated ProteinMPNN training dataset
The multi-chain training data for ProteinMPNN
Quickstart Usage
Install HuggingFace Datasets package
Each subset can be loaded into python using the Huggingface datasets library.
First, from the command line install the datasets library
$ pip install datasets
Optionally set the cache directory, e.g.
$ HF_HOME=${HOME}/.cache/huggingface/
$ export HF_HOME
then, from within python load the datasets library
>>> import datasets… See the full description on the dataset page: https://huggingface.co/datasets/RosettaCommons/ProteinMPNN.MegaScale
Mega-scale experimental analysis of protein folding stability in biology and design
The full MegaScale dataset contains 1,841,285 thermodynamic folding stability measurements
using cDNA display proteolysis of natural and designed proteins. From these 776,298 high-quality folding
stabilities (dataset2) cover all single amino acid variants and selected double mutants of 331 natural
and 148 de novo designed protein domains 40–72 amino acids in length. Of these mutations, 607,839 have… See the full description on the dataset page: https://huggingface.co/datasets/RosettaCommons/MegaScale.SAAINTDB
SAAINTDB
This dataset is a curated version of the SAAINT-DB converted into a format compatible with the Hugging Face Datasets for machine learning applications.
The dataset contains 21,400 antibody entries derived from 11,304 PDB structures, reflecting the available structures as of February 2026. Each entry corresponds to an antibody chain and is uniquely identified using the PDB_ID_chain field (PDB ID + chain ID).
Dataset Splits
The dataset was split at the PDB… See the full description on the dataset page: https://huggingface.co/datasets/RosettaCommons/SAAINTDB.SAbDab
ML Application Curated SAbDab
Quickstart Usage
Install HuggingFace Datasets package
Each subset can be loaded into python using the Huggingface datasets library.
First, from the command line install the datasets library
$ pip install datasets
Optionally set the cache directory, e.g.
$ HF_HOME=${HOME}/.cache/huggingface/
$ export HF_HOME
then, from within python load the datasets library
>>> import datasets
Load model datasets
To load… See the full description on the dataset page: https://huggingface.co/datasets/RosettaCommons/SAbDab.