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protein structure

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All datasets matching “protein structure”

agarosegirls /viral-protein-structuresFolded/Extracted structures from PDB, AF2, ESMAtlas, and additional structures folded via AlphaFold2 on the Kempner Institute H100 GPUs. 1 likes1.3k downloads6mo agoHugging Face PDBEurope /protein_structure_NER_model_v3.1 Overview This data was used to train model: https://huggingface.co/PDBEurope/BiomedNLP-PubMedBERT-ProteinStructure-NER-v3.1 There are 20 different entity types in this dataset: "bond_interaction", "chemical", "complex_assembly", "evidence", "experimental_method", "gene", "mutant", "oligomeric_state", "protein", "protein_state", "protein_type", "ptm", "residue_name", "residue_name_number","residue_number", "residue_range", "site", "species", "structure_element", "taxonomy_domain"… See the full description on the dataset page: https://huggingface.co/datasets/PDBEurope/protein_structure_NER_model_v3.1.0 likes292 downloads2y agoHugging Face PDBEurope /protein_structure_NER_model_v2.1 Overview This data was used to train model: https://huggingface.co/PDBEurope/BiomedNLP-PubMedBERT-ProteinStructure-NER-v2.1 There are 20 different entity types in this dataset: "bond_interaction", "chemical", "complex_assembly", "evidence", "experimental_method", "gene", "mutant", "oligomeric_state", "protein", "protein_state", "protein_type", "ptm", "residue_name", "residue_name_number","residue_number", "residue_range", "site", "species", "structure_element", "taxonomy_domain"… See the full description on the dataset page: https://huggingface.co/datasets/PDBEurope/protein_structure_NER_model_v2.1.0 likes284 downloads2y agoHugging Face mevol /protein_structure_NER_model_v3.1 Overview This data was used to train model: https://huggingface.co/mevol/BiomedNLP-PubMedBERT-ProteinStructure-NER-v3.1 There are 20 different entity types in this dataset: "bond_interaction", "chemical", "complex_assembly", "evidence", "experimental_method", "gene", "mutant", "oligomeric_state", "protein", "protein_state", "protein_type", "ptm", "residue_name", "residue_name_number","residue_number", "residue_range", "site", "species", "structure_element", "taxonomy_domain" The… See the full description on the dataset page: https://huggingface.co/datasets/mevol/protein_structure_NER_model_v3.1.0 likes205 downloads2y agoHugging Face mevol /protein_structure_NER_model_v2.1 Overview This data was used to train model: https://huggingface.co/mevol/BiomedNLP-PubMedBERT-ProteinStructure-NER-v2.1 There are 20 different entity types in this dataset: "bond_interaction", "chemical", "complex_assembly", "evidence", "experimental_method", "gene", "mutant", "oligomeric_state", "protein", "protein_state", "protein_type", "ptm", "residue_name", "residue_name_number","residue_number", "residue_range", "site", "species", "structure_element", "taxonomy_domain" The… See the full description on the dataset page: https://huggingface.co/datasets/mevol/protein_structure_NER_model_v2.1.0 likes193 downloads2y agoHugging Face mevol /protein_structure_NER_model_v1.4 Overview This data was used to train model: https://huggingface.co/mevol/BiomedNLP-PubMedBERT-ProteinStructure-NER-v1.4 There are 19 different entity types in this dataset: "chemical", "complex_assembly", "evidence", "experimental_method", "gene", "mutant", "oligomeric_state", "protein", "protein_state", "protein_type", "ptm", "residue_name", "residue_name_number","residue_number", "residue_range", "site", "species", "structure_element", "taxonomy_domain" The data prepared as IOB… See the full description on the dataset page: https://huggingface.co/datasets/mevol/protein_structure_NER_model_v1.4.0 likes153 downloads2y agoHugging Face