evo2
Datasets
All datasets matching “evo2”mgnify-evo2-l26-small-qualmgnify-evo2-l26-fullevo2-sae-handson
Evo 2 sparse autoencoder activations for the Escherichia coli K-12 MG1655 genome
SAE activations for every base of the chromosome (RefSeq GCF_000005845.2, NC_000913.3,
4,641,652 bp), with the embeddings, annotation and structures used by the
hands-on notebook.
How the activations were made
Evo 2 7B (arcinstitute/evo2_7b) was run over the circular chromosome in 16,384 bp
windows at a stride of 15,360 bp, discarding the first 1,024 bp of each window as context.
Each… See the full description on the dataset page: https://huggingface.co/datasets/suzuki-2001/evo2-sae-handson.evo2_datsetevo2-spaceflight-vep
Evo2 Zero-Shot VEP Scores for Spaceflight Radiation-Response Genes
Pre-computed zero-shot variant effect prediction scores from the Evo2 genomic foundation model (7B parameters) across 10 spaceflight radiation-response genes (215,001 scored variants).
Code: github.com/jang1563/evo2-spaceflight-vep
Dataset Description
Each row is a single variant (SNV or indel) scored by Evo2 using an 8,192 bp context window with reverse-complement averaging.
Columns… See the full description on the dataset page: https://huggingface.co/datasets/jang1563/evo2-spaceflight-vep.evo2_dataset
Evo2 Dataset
Dataset Description
Evo2 Dataset is an Evo2 mini genome dataset adapted for OneScience/evo2/. It contains FASTA, compressed FASTA, and merged FASTA files for human chr20, chr21, and chr22, as well as train, validation, and test .bin/.idx splits preprocessed with the Byte-Level tokenizer.
Supported Tasks
This dataset is not the complete OpenGenome2 dataset and is not intended to reproduce full-scale pretraining. It is intended for… See the full description on the dataset page: https://huggingface.co/datasets/OneScience-Group/evo2_dataset.