depin
Datasets
All datasets matching “depin”RESEARCH_DASHBOARD
Research Dashboard Data
Internal data store for the RACA experiments dashboard. Not meant for direct browsing.
Use the dashboard at your local URL or HF Space to view experiments.
Files: experiments.json, runs.json, sub_experiments.json, experiment_notes.json, activity_logs.json, artifacts.json, summary_findings.json
PROJECT-MANIFEST
PROJECT-MANIFEST
Central registry of all datasets in the depinwang organization.
Total Datasets Tracked: 10
Last Updated: 2026-09-08T04:53:41.334447+00:00
Usage
from datasets import load_dataset
manifest = load_dataset("depinwang/PROJECT-MANIFEST", split="train")
print(f"Tracking {len(manifest)} datasets")
Automatically managed by RACA hf_utility.
jinyang-omentum-pds-nmf-subtypes-results-v1
jinyang-omentum-pds-nmf-subtypes-results-v1
NMF splicing-subtype clustering + survival analysis on the PDS-only
(Treatment_strategy=='PDS') subset of the Omental-site HGSOC cohort (106 of 168
samples), reusing the exact method from
/Users/depin/src/tries/2026-01-27-three_sites_analysis_from_ovarian_cancer_data_by_cursor_agent.
Tests whether that project's original whole-cohort Omental finding (k=2, log-rank
p=0.0002, HR=2.10, C-index=0.591, n=168 PDS+NACT mixed) is robust to… See the full description on the dataset page: https://huggingface.co/datasets/depinwang/jinyang-omentum-pds-nmf-subtypes-results-v1.jinyang-omentum-rmats-outlier-fixed-biology-results-v1
jinyang-omentum-rmats-outlier-fixed-biology-results-v1
Biology of the k=2 subgroups from jinyang-omentum-rmats-outlier-fixed-clustering (cluster1 n=116 / cluster2 n=50, 166 outlier-excluded omentum samples; expression analyses on the 160-sample TPM-labeled intersection). CAVEAT (stated plainly, not buried): cluster1/cluster2 are collinear with sequencing platform to within one sample -- cluster 2 contains ZERO NovaSeq-6000 samples and cluster 1 is 113/116 NovaSeq-6000. The… See the full description on the dataset page: https://huggingface.co/datasets/depinwang/jinyang-omentum-rmats-outlier-fixed-biology-results-v1.jinyang-gse138866-rseqc-metrics-v1
jinyang-gse138866-rseqc-metrics-v1
FINAL (130/130) per-sample QC table for GSE138866 FFPE omental metastatic HGSOC bulk RNA-seq, complete production run. Pipeline: STAR 2-pass alignment (split pass1/pass2 sbatch steps, GRCh38 Ensembl-113) -> samtools markdup -> RustQC rna (all QC modules in one BAM pass) -> per-sample JSON -> this aggregate table. Both Stage A (STAR alignment, job 75309971) and Stage B (markdup+RustQC, job 75317062) reached 130/130 real completions with ZERO… See the full description on the dataset page: https://huggingface.co/datasets/depinwang/jinyang-gse138866-rseqc-metrics-v1.jinyang-gse138866-nmf-subtypes-results-v1
jinyang-gse138866-nmf-subtypes-results-v1
Canary run (N=110 real GSE138866 samples, turso job 75350352, gpu partition/dgx1-01,
completed 2026-09-15T09:04:36Z in ~1m40s) for outcome-blind NMF splicing-subtype
discovery -- a replication attempt of
2026-01-27-three_sites_analysis_from_ovarian_cancer_data_by_cursor_agent's Omental-site
finding (log-rank p=0.0002, C-index=0.591), using the same 10,019 high-confidence AS/PSI
events x 110 samples matrix as the sibling experiment… See the full description on the dataset page: https://huggingface.co/datasets/depinwang/jinyang-gse138866-nmf-subtypes-results-v1.