crispr
Datasets
All datasets matching “crispr”wholebrain_crispr_atlas
PerturbAI Brain-Wide In Vivo CRISPR Atlas
This dataset represents a landmark in functional genomics: spanning 8 million single cells in living tissue and hundreds of distinct neuronal cell types, this is the most expansive in vivo functional genomics resource ever created. By mapping the language of biology at an unprecedented scale, our platform provides the foundation for the next generation of AI-driven therapeutic discovery.
Manuscript: “Genome-scale functional mapping of… See the full description on the dataset page: https://huggingface.co/datasets/perturbai/wholebrain_crispr_atlas.crispr-depmapbeacon-crispr-on-target
BEACON — CRISPROnTarget
CRISPR RNA on-target activity prediction data.
Official data from the shared BEACON/RNABenchmark Drive folder:
https://drive.google.com/drive/folders/19ddrwI8ycvIxkgSV3gDo_VunLofYd4-6?hl=en.
This repository is the standardized Hugging Face publication of the official
task data. The data/ directory is the canonical viewer-friendly layer, and
the original files and directory layout are preserved for reproducibility.
beacon_manifest.json records source file… See the full description on the dataset page: https://huggingface.co/datasets/jiahaozhang2003/beacon-crispr-on-target.crisprme-data
CRISPRme reference data & precomputed indexes
A fast, reliable mirror of the reference resources CRISPRme needs, plus
precomputed indexes for the default references — so users can skip the slow
raw-data download, the multi-hour variant enrichment, and the index build
entirely.
Status: 🚧 work in progress — this repository is being populated. Layout and
filenames below are the target structure; not all assets are uploaded yet.
Why this exists
A genuine… See the full description on the dataset page: https://huggingface.co/datasets/lucapinello/crisprme-data.CRISPRviva-3B
Dataset Card for CRISPRviva-3B
Dataset Summary
CRISPRviva-3B is a large transcriptome sequence corpus consisting of over 3.7 billion sequences extracted from the specific transcriptome of 23 cell lines and over 200 segmented genomes of RNA virus.
Supported Tasks
Based on this nucleotide sequence corpus, we are able to establish a foundation model to characterize the manifold of CRISPR guide RNA targeting regions in order to undertake further downstreaming task… See the full description on the dataset page: https://huggingface.co/datasets/bm2-lab/CRISPRviva-3B.CRISPR_AI
Introduction
This dataset is used to train the model in CRISPR_AI. A file dataset.json.gz is generated by these [code]https://github.com/ljw20180420/CRISPR_AI/tree/main/AI/dataset. This dataset is further generated from dataset.json.gz.