RNA
Datasets
All datasets matching “RNA”rnafold
RNA 3D Structure Library and Targets
Predict the 3D structure of an RNA molecule from its sequence, as C1' atom coordinates per residue, given a library of thousands of experimentally solved RNA structures. train_sequences.csv and train_labels.csv give every training target's sequence and C1' coordinates, structures/ holds one coordinate-only mmCIF per training assembly, and test_sequences.csv lists the held-out targets, which were solved after every training structure was… See the full description on the dataset page: https://huggingface.co/datasets/Emulated-Inc/rnafold.rnacentral-pretokenized-shardedRNAgym
🧬 RNAGym
Benchmark suite for RNA fitness & structure prediction
RNAGym brings together >1 M mutational fitness measurements and curated RNA structure datasets in a single place. This Hugging Face repo lets you:
Download fitness benchmark data
Download secondary structure benchmark data
Download tertiary structure benchmark data
Contents
Folder
Purpose
fitness_prediction/
All mutation-fitness assays
secondary_structure_prediction/
Secondary… See the full description on the dataset page: https://huggingface.co/datasets/Marks-lab/RNAgym.rna-downstream-tasks
GB.RNA Benchmark Datasets
mRNA related tasks
Translation efficiency prediction from Chu et al.(2024) [1]
3 cell lines: Muscle, pc3, HEK
input sequence: 5'UTR
10-fold cross-validation split
mRNA expression level prediction from Chu et al.(2024) [1]
3 cell lines: Muscle, pc3, HEK
input sequence: 5'UTR
10-fold cross-validation split
Mean ribosome load prediction from Sample et al. (2019) [2]
input sequence: 5'UTR
ouput: mean ribosome load
the original data… See the full description on the dataset page: https://huggingface.co/datasets/genbio-ai/rna-downstream-tasks.RNAmd-v1
RNAmd v1
RNAmd is a public dataset of standardized RNA molecular-dynamics simulations,
RNA dynamic labels, quality-control summaries and benchmark-ready metadata for
compact functional and structured RNAs.
This Hugging Face Dataset repository is the core archival mirror for RNAmd v1.
It mirrors the analysis-ready metadata, labels, QC summaries, protocol files,
website index and RNA-only structures. The canonical RNAmd release server
remains the primary access point for processed… See the full description on the dataset page: https://huggingface.co/datasets/LlewynLuo/RNAmd-v1.RNA_chemical_ribonanza