Fish_GUE
Datasets
All datasets matching “Fish_GUE”Fish_GUE
FishGUE
FishGUE is a unified fish genomics benchmark developed for evaluating DNA foundation models and other sequence models on fish genomic prediction tasks.
It was introduced in the FishNALM study, where it was used to systematically benchmark fish-specific and general DNA language models across diverse regulatory sequence prediction tasks.
Dataset summary
FishGUE contains 17 supervised prediction tasks spanning four task groups:
Histone mark prediction
Transcription… See the full description on the dataset page: https://huggingface.co/datasets/bioinfoihb/Fish_GUE.FishGUE-Heldout-Splice-5Species
FishGUE Held-out Splice-Site Benchmark (5 Species)
Dataset summary
This repository contains splice-site evaluation datasets for five fish species that were strictly held out from the FishNALM pretraining corpus and from FishGUE model development. The datasets were constructed to evaluate cross-species generalization beyond the species used to develop FishNALM and the original FishGUE benchmark.
Each species is evaluated on three sequence-classification tasks:… See the full description on the dataset page: https://huggingface.co/datasets/bioinfoihb/FishGUE-Heldout-Splice-5Species.