tdc/Geneformer

1from setuptools import setup, find_packages2 3setup(4    name="geneformer",5    version="0.1.0",6    author="Christina Theodoris",7    author_email="christina.theodoris@gladstone.ucsf.edu",8    description="Geneformer is a transformer model pretrained \9                 on a large-scale corpus of single \10                 cell transcriptomes to enable context-aware \11                 predictions in settings with limited data in \12                 network biology.",13    packages=find_packages(),14    python_requires=">=3.10",15    include_package_data=True,16    install_requires=[17        "anndata",18        "datasets",19        "loompy",20        "matplotlib",21        "numpy",22        "optuna",23        "optuna-integration",24        "packaging",25        "pandas",26        "peft",27        "pyarrow",28        "pytz",29        "ray",30        "scanpy",31        "scikit-learn",32        "scipy",33        "seaborn",34        "setuptools",35        "statsmodels",36        "tdigest",37        "tensorboard",38        "torch",39        "tqdm",40        "transformers",41    ],42)43