ctheodoris/Geneformer

1from setuptools import setup, find_packages2 3setup(4    name="geneformer",5    version="0.1.0",6    author="Christina Theodoris",7    author_email="christina.theodoris@gladstone.ucsf.edu",8    description="Geneformer is a transformer model pretrained \9                 on a large-scale corpus of single \10                 cell transcriptomes to enable context-aware \11                 predictions in settings with limited data in \12                 network biology.",13    packages=find_packages(),14    python_requires=">=3.10",15    include_package_data=True,16    install_requires=[17        "anndata",18        "bitsandbytes",19        "datasets",20        "loompy",21        "matplotlib",22        "numpy",23        "optuna",24        "optuna-integration",25        "packaging",26        "pandas",27        "peft",28        "pyarrow",29        "pytz",30        "ray",31        "scanpy",32        "scikit-learn",33        "scipy",34        "seaborn",35        "setuptools",36        "statsmodels",37        "tdigest",38        "tensorboard",39        "torch",40        "tqdm",41        "transformers",42    ],43)44