datasets
Training and evaluation data, with the modality, task and licence stated up front. Listed live from the Hugging Face Hub.
ProteinLMBench
ProteinLMBench
A benchmark dataset for LLMs in protein related tasks.
protein-ligand-design
🧪 Protein-Ligand Design Gym — Team JAMMY
poolside Laguna Hackathon submission. A tool-use reinforcement-learning
environment that teaches an LLM to reason like a bench computational chemist /
protein engineer — by measuring, not guessing.
The problem
Proteins are the molecular machines inside living cells, each built from a long
string of amino-acid "letters". Ligands are the small molecules — most drugs
among them — that bind to a protein to switch it on or… See the full description on the dataset page: https://huggingface.co/datasets/poolside-laguna-hackathon/protein-ligand-design.protein_stability_single_mutation
Protein Data Stability - Single Mutation
This repository contains data on the change in protein stability with a single mutation.
Attribution of Data Sources
Primary Source: Tsuboyama, K., Dauparas, J., Chen, J. et al. Mega-scale experimental analysis of protein folding stability in biology and design. Nature 620, 434–444 (2023). Link to the paper
Dataset Link: Zenodo Record
As to where the dataset comes from in this broader work, the relevant dataset (#3) is shown in… See the full description on the dataset page: https://huggingface.co/datasets/Trelis/protein_stability_single_mutation.ProteinLMBench
Bud Ecosystem mirror of tsynbio/ProteinLMBench — a verbatim copy for offline, reproducible model evaluation. License unchanged (Apache-2.0 (release metadata additionally CC-BY-4.0)); all rights remain with the original authors.
ProteinLMBench
A benchmark dataset for LLMs in protein related tasks.
protein-sft-uniprot
protein-sft-uniprot
단백질 연구 특화 LLM 학습을 위한 SFT(Supervised Fine-Tuning) 데이터셋입니다.
UniProt 데이터베이스와 단백질 문헌에서 추출한 Q&A 형식의 대화 데이터로 구성되어 있습니다.
Dataset Summary
Total samples
1,551,711
Unique proteins
455,613
Format
JSONL (chat messages)
Size
462MB
Sources
Source
Samples
Description
UniProtQA
1,513,126
UniProt 데이터베이스에서 구조화된 단백질 정보 추출
Protein2Text-QA
38,585
단백질 관련 문헌 기반 심화 Q&A
Question Types
Type
Samples
Example… See the full description on the dataset page: https://huggingface.co/datasets/im-sangwoon/protein-sft-uniprot.ProteinLMDataset-Reason-release
ProteinLMDataset-Reason
Dataset Summary
ProteinLMDataset-Reason is a large-scale protein reasoning
question-answer dataset constructed from curated UniProtKB/Swiss-Prot
annotations.
Each record contains:
instruction:
protein-specific question
input:
amino-acid sequence
output:
serialized Basic Protein Template,
model-generated explanatory rationale,
and curated reference answer
Dataset Construction
The dataset was constructed from… See the full description on the dataset page: https://huggingface.co/datasets/wagnchogn/ProteinLMDataset-Reason-release.