datasets
Training and evaluation data, with the modality, task and licence stated up front. Listed live from the Hugging Face Hub.
TCGA_virtual_spatial_transcriptomics_atlas
TCGA virtual spatial transcriptomics atlas
This repository contains predicted spatial transcriptomics for TCGA H&E slides,
both fresh-frozen (FF) and formalin-fixed paraffin-embedded (FFPE), produced
with DeepSpot-M.
Authors: Kalin Nonchev, Sebastian Dawo, Karina Silina, Viktor Hendrik
Koelzer, and Gunnar Rätsch.
Model: ratschlab/DeepSpotM · Code: github.com/ratschlab/DeepSpotM · Paper: medRxiv 2026.06.19.26356060.
News
[09.2026] Introducing Aurora - a no-code… See the full description on the dataset page: https://huggingface.co/datasets/ratschlab/TCGA_virtual_spatial_transcriptomics_atlas.HEST_Xenium_virtual_spatial_transcriptomics
HEST Xenium virtual spatial transcriptomics
This repository contains predicted spatial transcriptomics for HEST Xenium H&E
slides produced with DeepSpot-M.
Authors: Kalin Nonchev, Sebastian Dawo, Karina Silina, Viktor Hendrik
Koelzer, and Gunnar Rätsch.
Paper: DeepSpot-M: a multimodal foundation model for transcriptome-wide virtual spatial transcriptomics from histology (medRxiv, 2026; see the citation below).
Code: https://github.com/ratschlab/DeepSpotM.
News… See the full description on the dataset page: https://huggingface.co/datasets/ratschlab/HEST_Xenium_virtual_spatial_transcriptomics.