datasets
Training and evaluation data, with the modality, task and licence stated up front. Listed live from the Hugging Face Hub.
Lurcher_10x
Lurcher 10x Microscopy Dataset
Dataset overview
This dataset consists of 2-D microscopy images of histologically stained 3-D structures in tissue sections through the cerebellum of 21 mouse brains. Animals are grouped into wild-type controls (n = 10) and Lurcher mutant mice (n = 11). The classification task is to distinguish Lurcher mutant mice from wild-type controls.
All images were captured at low magnification (10x) and stained with Cresyl violet, a general… See the full description on the dataset page: https://huggingface.co/datasets/USF-CS-Microscopy-Image-Analysis/Lurcher_10x.biomedica_microscopy_imagining_subset_parquet
Dataset Card for "biomedica_microscopy_imagining_subset_parquet"
More Information needed
malaria-microscopy-vqa
Malaria Microscopy Visual Question Answering (VQA) Dataset
Dataset Description
This dataset contains multi-choice visual question answering pairs for malaria microscopy images, focusing on parasite detection, classification, species identification, and severity assessment.
Dataset Summary
The Malaria Microscopy VQA Dataset is designed for training and evaluating AI systems on medical microscopy image analysis tasks. It contains 67 questions across 59 unique… See the full description on the dataset page: https://huggingface.co/datasets/EricPeter/malaria-microscopy-vqa.africa-synth-malaria-malaria-rdt-microscopy-all
Malaria RDT & Microscopy | Africa (World Health Organization)
Size category: 10K<n<100K - Formats: csv - Sector: health - Engineered by Electric Sheep Africa
TL;DR
This dataset is part of the Electric Sheep Africa catalog on Hugging Face. It is indexed for African data discovery with standardized metadata, loading guidance, provenance notes, and analyst-oriented context.
What This Dataset Covers
Health datasets help researchers examine disease… See the full description on the dataset page: https://huggingface.co/datasets/electricsheepafrica/africa-synth-malaria-malaria-rdt-microscopy-all.microscopy_imagesclip_microscopy_image_text_embeddingsmicroscopygpt_jarvisdft_2dmicroscopygpt_jarvisdft_2dafrica-who-number-of-malaria-suspects-examined-by-microscopy
Africa — WHO GHO: Number of malaria suspects examined by microscopy | Africa (World Health Organization)
Size category: n<1K - Formats: parquet - Sector: health - Engineered by Electric Sheep Africa
TL;DR
This dataset is part of the Electric Sheep Africa catalog on Hugging Face. It is indexed for African data discovery with standardized metadata, loading guidance, provenance notes, and analyst-oriented context.
What This Dataset Covers
Health… See the full description on the dataset page: https://huggingface.co/datasets/electricsheepafrica/africa-who-number-of-malaria-suspects-examined-by-microscopy.africa-who-number-of-malaria-positive-cases-by-microscopy
Africa — WHO GHO: Number of malaria positive cases by microscopy | Africa (World Health Organization)
Size category: n<1K - Formats: parquet - Sector: health - Engineered by Electric Sheep Africa
TL;DR
This dataset is part of the Electric Sheep Africa catalog on Hugging Face. It is indexed for African data discovery with standardized metadata, loading guidance, provenance notes, and analyst-oriented context.
What This Dataset Covers
Health… See the full description on the dataset page: https://huggingface.co/datasets/electricsheepafrica/africa-who-number-of-malaria-positive-cases-by-microscopy.asia-who-number-of-malaria-suspects-examined-by-microscopy
Africa — WHO GHO: Number of malaria suspects examined by microscopy
Indicator code: MALARIA_MICR_TEST
HuggingFace slug: electricsheepafrica/asia-who-number-of-malaria-suspects-examined-by-microscopy
Source: WHO Global Health Observatory
License: CC BY 4.0 — WHO Open Data
Dataset Description
This dataset contains country-level observations for the WHO GHO indicator "Number of malaria suspects examined by microscopy" (MALARIA_MICR_TEST) across Asian nations, spanning… See the full description on the dataset page: https://huggingface.co/datasets/electricsheepasia/asia-who-number-of-malaria-suspects-examined-by-microscopy.asia-who-number-of-malaria-positive-cases-by-microscopy
Africa — WHO GHO: Number of malaria positive cases by microscopy
Indicator code: MALARIA_MICR_POS
HuggingFace slug: electricsheepafrica/asia-who-number-of-malaria-positive-cases-by-microscopy
Source: WHO Global Health Observatory
License: CC BY 4.0 — WHO Open Data
Dataset Description
This dataset contains country-level observations for the WHO GHO indicator "Number of malaria positive cases by microscopy" (MALARIA_MICR_POS) across Asian nations, spanning 2015–2024.… See the full description on the dataset page: https://huggingface.co/datasets/electricsheepasia/asia-who-number-of-malaria-positive-cases-by-microscopy.clip_microscopy_img_embeddingsmicroscopy-parasitesmicroscopy-datasets-index
Microscopy Datasets Index
I kept losing track of which microscopy datasets exist and what format they're in. So I made an index. 300+ open datasets, searchable by domain, task, microscopy type, and license.
What's in here
A single reference file (JSONL and Parquet) cataloging 309 publicly available microscopy datasets. Each entry includes:
id — short slug
name — human-readable dataset name
source — who published it (Broad Institute, Kaggle, ISBI, etc.)
url — direct link… See the full description on the dataset page: https://huggingface.co/datasets/Laborator/microscopy-datasets-index.