datasets
Training and evaluation data, with the modality, task and licence stated up front. Listed live from the Hugging Face Hub.
bio-faiss-microbiome-v1
bio-faiss-microbiome-v1
A FAISS index + metadata for scientific retrieval
Contents
index.faiss: FAISS index (cosine w/ inner product).
meta.jsonl: one JSON per chunk; fields include chunk_id, paper_id, title, section, subsection, paragraph_index, keywords, boost.
Build provenance
Chunking: hierarchical (section→paragraph→~380-token chunks, ~15% overlap)
Embedder: bio-protocol/scientific-retriever (mean-pooled, L2-normalized)
Similarity: cosine via inner… See the full description on the dataset page: https://huggingface.co/datasets/bio-protocol/bio-faiss-microbiome-v1.huberman_lab_How_to_Enhance_Your_Gut_Microbiome_for_Brain__Overall_Healthmicrobiome-health-ibdBioFactory-Asian-Oral-Microbiome-Preview
🦷 World's First Chinese-Anchored Oral Multi-Omics Synthetic Dataset (v2026)
3,872 production records · PERMANOVA p=0.994 · MMD=0.060 · 100% synthetic = zero GDPR risk
📄 Full Whitepaper ·
📋 1-Page Executive Summary ·
🔬 38-Sample Preview ·
📧 Enterprise: jerry820402@hotmail.com
English Executive Summary
This is the world's first Asian/Chinese-specific oral microbiome multi-omics synthetic dataset, generated via Evo foundation model inference on 8× NVIDIA A800… See the full description on the dataset page: https://huggingface.co/datasets/jerry982/BioFactory-Asian-Oral-Microbiome-Preview.microbiome-training-pmc-expertqa_abstracts_2-sep_answers-v1_0_4microbiome-training-pmc_extracted_methods_batch_0microbiome-uc-ibdmicrobiome-16s-v1_0_4microbiome-cmd-v1_0_4microbiome-leuconostoc-brachyspira
Leucnostoc and Brachyspira Microbiome Findings
This dataset contains scientific findings about bacteria in the human gut microbiome in health and ulcerative colitis.
Dataset Structure
The dataset follows the same structure as TinyStories, with a single 'text' field containing scientific findings from research papers.
Example:
Metagenomic insights to understand the role of polluted river Yamuna in shaping the gut microbial communities of two invasive fish species.. The… See the full description on the dataset page: https://huggingface.co/datasets/polejowska/microbiome-leuconostoc-brachyspira.microbiome-american_gut_project-v1_0_4microbiome-american_gut_project_disease-v1_0_4microbiome-16s_to_functions-v1_0_4microbiome-summariesssa-breast-gut-microbiome
SSA Breast Gut Microbiome Dataset (Women, Multi-ancestry) | Africa (Electric Sheep Africa metadata inventory)
Size category: 10K<n<100K - Formats: parquet - Sector: health - Engineered by Electric Sheep Africa
TL;DR
This dataset is part of the Electric Sheep Africa catalog on Hugging Face. It is indexed for African data discovery with standardized metadata, loading guidance, provenance notes, and analyst-oriented context.
What This Dataset Covers… See the full description on the dataset page: https://huggingface.co/datasets/electricsheepafrica/ssa-breast-gut-microbiome.microbiome-summaries-2cases_microbiomeThis dataset contains 105 patient descriptions that are looking for clinical trials investigating interventions targeting their microbiome.
The dataset was intentionally distributed across 18 disease categories of various disease settings, locations spread accross 17 countries, and broad spectrum of age ranges.
Disease Categories covered by the dataset:
Cardiovascular Diseases
Musculoskeletal Issues
Type 2 Diabetes
Skin Diseases
Gastrointestinal Disorders
Digestive Disorders
Mental Health… See the full description on the dataset page: https://huggingface.co/datasets/Elysr/cases_microbiome.microbiome-summaries-3microbiome-disease-dataset
Dataset Card for Dataset Name
This dataset card aims to be a base template for new datasets. It has been generated using this raw template.
Dataset Details
Dataset Description
Curated by: [More Information Needed]
Funded by [optional]: [More Information Needed]
Shared by [optional]: [More Information Needed]
Language(s) (NLP): [More Information Needed]
License: [More Information Needed]
Dataset Sources [optional]
Repository: [More… See the full description on the dataset page: https://huggingface.co/datasets/elizah521/microbiome-disease-dataset.ABX-HT-006_microbiome_diversity_collapse-v0.1ABX-HT-006 Microbiome Diversity Collapse
Purpose
Detect early microbiome collapse that predicts C. difficile risk.
Core pattern
host_stress_index high
abx_exposure_index high
microbiome_coherence_index drops
shannon_drop_vs_expected stays high
domination_rise_vs_expected stays high
later_cdiff_flag appears
Files
data/train.csv
data/test.csv
scorer.py
Schema
Each row is one timepoint in a within series microbiome time course.
Required columns
row_id
series_id
timepoint_d
host_model
drug… See the full description on the dataset page: https://huggingface.co/datasets/ClarusC64/ABX-HT-006_microbiome_diversity_collapse-v0.1.