datasets
Training and evaluation data, with the modality, task and licence stated up front. Listed live from the Hugging Face Hub.
human_methylation_bench_ver1_test
Human DNA Methylation Dataset ver1
This dataset is a benchmark dataset for predicting the aging clock, curated from publicly available DNA methylation data. The original benchmark dataset was published by Dmitrii Kriukov et al. (2024) by integrating data from 65 individual studies.
To improve usability, we ensured unique sample IDs (excluding duplicate data, GSE118468 and GSE118469) and randomly split the data into training and testing subsets (train : test = 7 : 3) to… See the full description on the dataset page: https://huggingface.co/datasets/openaging/human_methylation_bench_ver1_test.human_methylation_bench_ver1_train
Human DNA Methylation Dataset ver1
This dataset is a benchmark dataset for predicting the aging clock, curated from publicly available DNA methylation data. The original benchmark dataset was published by Dmitrii Kriukov et al. (2024) by integrating data from 65 individual studies.
To improve usability, we ensured unique sample IDs (excluding duplicate data, GSE118468 and GSE118469) and randomly split the data into training and testing subsets (train : test = 7 : 3) to… See the full description on the dataset page: https://huggingface.co/datasets/openaging/human_methylation_bench_ver1_train.cpg_methylation_benchmark_v1s2f-mouse-methylation
S2F Mouse Methylation Dataset
Sequence-to-function dataset for predicting CpG DNA methylation from genomic sequence in nine genetically diverse Collaborative Cross mouse founder strains.
Dataset Description
This dataset contains approximately 20 million sequence-methylation examples derived from reduced representation bisulfite sequencing (RRBS) data from nine Collaborative Cross founder strains. Each example pairs a 2,000-nucleotide DNA sequence window centered at a CpG… See the full description on the dataset page: https://huggingface.co/datasets/cbreenmachine/s2f-mouse-methylation.human_methylation_bench_ver1_Leaderboard_result