datasets
Training and evaluation data, with the modality, task and licence stated up front. Listed live from the Hugging Face Hub.
CDS-BART-mRNA-stability📊 mRNA Stability dataset
This dataset contains thousands of mRNA stability profiles obtained from various species, including humans, mice, frogs, and fish.
It provides essential information on the stability of mRNA molecules, contributing to our understanding of post-transcriptional regulation.
The original dataset is from CodonBERT.
⁉️ Dataset Contents
Sequence: The mRNA sequence of the mRNA stability
Stability: Half life, the time it takes for half of the mRNA molecules in a population to… See the full description on the dataset page: https://huggingface.co/datasets/mogam-ai/CDS-BART-mRNA-stability.mrna_stability_othervep-traitgym-mrna
Overview
The variant effect prediction task measures the pathogenicity of single nucleotide polymorpism (SNPs). This dataset is a reprocessing of the TraitGym dataset (https://huggingface.co/datasets/songlab/TraitGym), see original dataset for data generation process. We have filtered TraitGym to only include SNPs in mature mRNA UTR regions, and provide the mRNA transcript sequence context for the SNP using the principle isoform as determined by APPRIS.
This dataset is redistributed… See the full description on the dataset page: https://huggingface.co/datasets/morrislab/vep-traitgym-mrna.vep-traitgym-mrna
Overview
The variant effect prediction task measures the pathogenicity of single nucleotide polymorpism (SNPs). This dataset is a reprocessing of the TraitGym dataset (https://huggingface.co/datasets/songlab/TraitGym), see original dataset for data generation process. We have filtered TraitGym to only include SNPs in mature mRNA UTR regions, and provide the mRNA transcript sequence context for the SNP using the principle isoform as determined by APPRIS.
Data Format… See the full description on the dataset page: https://huggingface.co/datasets/anonymous-flamingo/vep-traitgym-mrna.pml-promptmrna_half_life