datasets
Training and evaluation data, with the modality, task and licence stated up front. Listed live from the Hugging Face Hub.
evo2_datsetevo2-spaceflight-vep
Evo2 Zero-Shot VEP Scores for Spaceflight Radiation-Response Genes
Pre-computed zero-shot variant effect prediction scores from the Evo2 genomic foundation model (7B parameters) across 10 spaceflight radiation-response genes (215,001 scored variants).
Code: github.com/jang1563/evo2-spaceflight-vep
Dataset Description
Each row is a single variant (SNV or indel) scored by Evo2 using an 8,192 bp context window with reverse-complement averaging.
Columns… See the full description on the dataset page: https://huggingface.co/datasets/jang1563/evo2-spaceflight-vep.mgnify-evo2-amr-shortread-eval-v0
MGnify × Evo 2 short-read AMR detection eval (v0)
A small reproducibility benchmark for AMR detection on simulated short reads
using the Evo 2 DNA foundation model.
What's here
reads.jsonl — 100 records (50 AMR-positive, 50 matched-negative)
embeddings/<read_id>.npz — Evo 2 layer-26 activations per read
Source
All reads were simulated (MiSeq-like, 301 bp, paired-end, ART simulator) from
two CDSs in MGnify MAG MGYG000307615 (chicken-gut catalogue):
Positives:… See the full description on the dataset page: https://huggingface.co/datasets/JG1310/mgnify-evo2-amr-shortread-eval-v0.evo2_logoEvo2_7b_scoresEvo2-1