datasets
Training and evaluation data, with the modality, task and licence stated up front. Listed live from the Hugging Face Hub.
uniref90
UniRef90
Complete UniRef90 dataset from UniProt, converted from XML to sharded Parquet. UniRef90 clusters sequences at 90% identity, providing a non-redundant protein sequence resource that balances comprehensiveness with reduced redundancy.
Part of the ConvergeBio Protein Database Collection — see also UniRef100, UniRef50, and UniClust30.
Dataset Summary
Clusters
188,848,220
Shards
386
Compressed size
~52 GB (zstd)
Sequence lengths
11 – 49,499 aa… See the full description on the dataset page: https://huggingface.co/datasets/ConvergeBio/uniref90.UniRef90
UniRef90 Shard Index
UniRef90 is a clustered protein sequence dataset from UniProt where sequences are grouped so that each cluster contains proteins with at least 90% sequence identity. It reduces redundancy while preserving broad protein sequence coverage, making it useful for protein search, annotation transfer, and training protein language models.
Splits
The split is deterministic by file ID: sha256(file_id) % 10. Bucket 0 is test; buckets 1 through 9 are train.… See the full description on the dataset page: https://huggingface.co/datasets/LiteFold/UniRef90.UniRef90_len_0_50
This is a dataset download from UniRef90 database with sequence length ranging from 0 to 50
codes for the data mining (downloaded on September 30 2024)
import requests
query_url = 'https://rest.uniprot.org/uniref/stream?compressed=true&fields=id%2Clength%2Cidentity%2Csequence&format=tsv&query=%28%28length%3A%5B*+TO+50%5D%29%29+AND+%28identity%3A0.9%29'
uniprot_request = requests.get(query_url)
from io import BytesIO
import pandas
bio = BytesIO(uniprot_request.content)
df =… See the full description on the dataset page: https://huggingface.co/datasets/dzjxzyd/UniRef90_len_0_50.Uniref90_large_temp
Dataset Card for "Uniref90_large_temp"
More Information needed
Uniref90_temp
Dataset Card for "Uniref90_temp"
More Information needed
UniRef90-GPCR-ProteinsAll UniRef90 sequences of G-protein coupled receptors (GPCR) class proteins across all species. G-protein coupled receptors are evolutionarily related proteins and cell surface receptors that detect molecules outside the cell in Eukariotes.
Contains both confirmed and putative proteins.
UniRef90_len_0_100