datasets
Training and evaluation data, with the modality, task and licence stated up front. Listed live from the Hugging Face Hub.
uniprot_binding_sites_multiple
Dataset Details
Dataset Description
Binding sites of a molecule in protein sequences.
Curated by:
License: MIT
Dataset Sources
data source
Citation
BibTeX:
@article{10.1093/nar/gkac1052,
author = {The UniProt Consortium},
title = {UniProt - the Universal Protein Knowledgebase in 2023},
journal = {Nucleic Acids Research},
volume = {51},
number = {D1},
pages = {D523-D531},
year = {2022},
month = {11},
issn = {0305-1048},
doi =… See the full description on the dataset page: https://huggingface.co/datasets/jablonkagroup/uniprot_binding_sites_multiple.uniprot_binding_single
Dataset Details
Dataset Description
Binding sites of a molecule in protein sequences.
Curated by:
License: MIT
Dataset Sources
data source
Citation
BibTeX:
@article{10.1093/nar/gkac1052,
author = {The UniProt Consortium},
title = {UniProt - the Universal Protein Knowledgebase in 2023},
journal = {Nucleic Acids Research},
volume = {51},
number = {D1},
pages = {D523-D531},
year = {2022},
month = {11},
issn = {0305-1048},
doi =… See the full description on the dataset page: https://huggingface.co/datasets/jablonkagroup/uniprot_binding_single.UniProtKB
UniProtKB Processed
The aim of the UniProt Knowledgebase (UniProtKB; https://www.uniprot.org/) is to provide users with a comprehensive, high-quality and freely accessible set of protein sequences annotated with functional information. In this publication, we describe ongoing changes to our production pipeline to limit the sequences available in UniProtKB to high-quality, non-redundant reference proteomes. We continue to manually curate the scientific literature to add the latest… See the full description on the dataset page: https://huggingface.co/datasets/LiteFold/UniProtKB.tokenized_uniprotkb_1024_sequence_lengthuniprot_subcellular_localization
UniProt Subcellular Localization (Vertebrates) — ProVADA
A curated collection of vertebrate UniProt/Swiss‑Prot protein domains labeled for cytosolic and extracellular localization. We remove signal peptides, restrict domain lengths, and provide both the full set and a 30% identity‑clustered representative set with train/test/validation splits (70/20/10). This dataset underpins the subcellular localization oracle in ProVADA (preprint).
See the Files section for exact filenames and… See the full description on the dataset page: https://huggingface.co/datasets/Xiaowei0402/uniprot_subcellular_localization.uniprot_protparams
uniprot_protparams
Protein-level sequence property dataset for UniProtKB entries. length and
mass are UniProt-reported; the other properties are calculated with
Biopython's ProteinAnalysis. Select one property per scalar regression run
with steps.prepare.label_column.
Source and preprocessing
UniProt REST API: https://rest.uniprot.org/uniprotkb/stream
Card generated (UTC): 2026-09-25
UniProt query: (organism_id:9606) AND (reviewed:true)
Organism Taxonomy ID:… See the full description on the dataset page: https://huggingface.co/datasets/swhitfield/uniprot_protparams.tokenized_uniprotkb_binary_label_1024_length_pre_split_random_1_percenttokenized_uniprotkb_binary_label_1024_length_pre_split_random_0_25_percentuniprot2025_03