datasets
Training and evaluation data, with the modality, task and licence stated up front. Listed live from the Hugging Face Hub.
rna-downstream-tasks
GB.RNA Benchmark Datasets
mRNA related tasks
Translation efficiency prediction from Chu et al.(2024) [1]
3 cell lines: Muscle, pc3, HEK
input sequence: 5'UTR
10-fold cross-validation split
mRNA expression level prediction from Chu et al.(2024) [1]
3 cell lines: Muscle, pc3, HEK
input sequence: 5'UTR
10-fold cross-validation split
Mean ribosome load prediction from Sample et al. (2019) [2]
input sequence: 5'UTR
ouput: mean ribosome load
the original data… See the full description on the dataset page: https://huggingface.co/datasets/genbio-ai/rna-downstream-tasks.RNA_chemical_ribonanzaRNA_degradationrna-stability-siegel
Overview
This dataset contains 3' UTR fragment measurements from the fast-UTR
massively parallel reporter assay reported by Siegel et al. The source library
contains 41,255 sequences tested in Jurkat T cells and BEAS-2B airway
epithelial cells. Each configuration retains rows with a T4 stability target,
a T4 effect target, or a reference needed to pair a measured effect. The
library contains native human 3' UTR fragments, natural variants, and designed
mutations of regulatory… See the full description on the dataset page: https://huggingface.co/datasets/morrislab/rna-stability-siegel.gtex-single-cell-rnaseq
GTEx Single-Cell RNA-seq Dataset
This repository provides tools to create a Hugging Face dataset from GTEx single-nucleus RNA-seq data, transforming the hierarchical H5AD format into a flat, ML-ready structure.
Overview
Data Source
The data comes from GTEx's snRNA-seq atlas:
Source: GTEx Portal
Publication: Eraslan et al., Science 2022 - "Single-nucleus cross-tissue molecular reference maps toward understanding disease gene function"
Content: 209… See the full description on the dataset page: https://huggingface.co/datasets/ai-department-lpnu/gtex-single-cell-rnaseq.litsumm-v1.5Bulk-RNA-Seq-BenchmarkBulk RNA-seq benchmark for foundation-model evaluation: 58 tasks
(25 regression, 33 classification) across 38 datasets spanning
clinical outcome prediction, diagnostics, and biological/pharmacological phenotyping.
Format
One Parquet file per dataset in data/. Each row is a sample; columns are:
sample_id — sample accession (GSM / cell line / donor id).
gene columns — the native expression matrix X (gene-symbol headers).
y__<task> — one label column per task on that dataset. NaN… See the full description on the dataset page: https://huggingface.co/datasets/mibohl/Bulk-RNA-Seq-Benchmark.litsumm-v1bioreason_rnassa-breast-rna-expression
SSA Breast RNA Expression Dataset (Normal & Tumor, Multi-ancestry) | Africa (Electric Sheep Africa metadata inventory)
Size category: 10K<n<100K - Formats: parquet - Sector: health - Engineered by Electric Sheep Africa
TL;DR
This dataset is part of the Electric Sheep Africa catalog on Hugging Face. It is indexed for African data discovery with standardized metadata, loading guidance, provenance notes, and analyst-oriented context.
What This Dataset… See the full description on the dataset page: https://huggingface.co/datasets/electricsheepafrica/ssa-breast-rna-expression.beacon-programmable-rna-switches
BEACON — ProgrammableRNASwitches
Programmable RNA-switch activity prediction data.
Official data from the shared BEACON/RNABenchmark Drive folder:
https://drive.google.com/drive/folders/19ddrwI8ycvIxkgSV3gDo_VunLofYd4-6?hl=en.
This repository is the standardized Hugging Face publication of the official
task data. The data/ directory is the canonical viewer-friendly layer, and
the original files and directory layout are preserved for reproducibility.
beacon_manifest.json records… See the full description on the dataset page: https://huggingface.co/datasets/jiahaozhang2003/beacon-programmable-rna-switches.rnacentral_contrastssma-gse108094-motor-neuron-rnaseq
GSE108094 SMA Motor-Neuron RNA-seq
This repository contains processed RNA-sequencing results and GEO/SRA metadata for human SMA and control iPSC-derived motor neurons.
The experiment has eight libraries from four biological cell lines: two SMA and two control lines, each with two sequencing replicates. The repository contains the differential-expression output, alternative-splicing output, series matrix, MINiML family file, SOFT family file, and SRA run inventory. The… See the full description on the dataset page: https://huggingface.co/datasets/YannisTevissen/sma-gse108094-motor-neuron-rnaseq.rnacentral-modifications
RNAcentral
RNAcentral is a free, public resource that offers integrated access to a comprehensive and up-to-date set of non-coding RNA sequences provided by a collaborating group of Expert Databases representing a broad range of organisms and RNA types.
The development of RNAcentral is coordinated by European Bioinformatics Institute and is supported by Wellcome. Initial funding was provided by BBSRC.
Disclaimer
This is an UNOFFICIAL release of the RNAcentral by The… See the full description on the dataset page: https://huggingface.co/datasets/multimolecule/rnacentral-modifications.SRA_metadata_RNAseq_special_sets
RNA-seq Subsets Derived from the 1M Human SRA Metadata Dataset
Extracted from the 1M annotated sample: chumphati/1M_RNAseq_SRA_samples_annotations.
Annotated with Metappuccino (Fiona Hak, Camille Marchet, Daniel Gautheret, Mélina Gallopin, Metappuccino: large language model-driven reconstruction of sequence read archive metadata for cancer research, Bioinformatics, Volume 42, Issue 5, May 2026, btag166, https://doi.org/10.1093/bioinformatics/btag166).
CCLE-like… See the full description on the dataset page: https://huggingface.co/datasets/chumphati/SRA_metadata_RNAseq_special_sets.Paul_RNA_Sequence_Processed_Datasetafrica-senegal-superficies-sous-rna-ha-a521e55a
Superficies Sous Rna Ha | Africa (DPVE)
1 rows - 1 Africa country/area - 2008 - source table - Engineered by Electric Sheep Africa
TL;DR
This dataset contains 1 rows from DPVE, covering Superficies Sous Rna Ha. It is published as ML-ready Parquet with consistent Hugging Face metadata, source provenance, and analysis-friendly loading examples.
What This Dataset Measures
Official statistics datasets help analysts inspect public data as published… See the full description on the dataset page: https://huggingface.co/datasets/electricsheepafrica/africa-senegal-superficies-sous-rna-ha-a521e55a.rna-structurewashnorm2021_test_questions
Dataset Card for "WASHNORM 2021 Test Questions and Answers"
This dataset contains 90 Question and Answer pairs, 2 extra reference answers for each question. It was created from the WASHNORM 2021 Report's Executive Summary which can be found on UNICEF Nigeria's Website.
Dataset Description
Notebook: Contains code where majority of data extraction and generation was carried out.
Repository: Contains code for the WASH Services Chatbot that this dataset was generated to test.… See the full description on the dataset page: https://huggingface.co/datasets/rnabage/washnorm2021_test_questions.