datasets
Training and evaluation data, with the modality, task and licence stated up front. Listed live from the Hugging Face Hub.
bacbench-ppi-stringdb-protein-sequences
Dataset for protein-protein interaction prediction across bacteria (Protein sequences)
A dataset of 10,533 bacterial genomes across 6,956 species with protein-protein interaction (PPI) scores for each genome.
The genome protein sequences and PPI scores have been extracted from STRING DB.
Each row contains a set of protein sequences from a genome, ordered by their location on the chromosome and plasmids and a set of associated PPI scores.
The PPI scores have been extracted using the… See the full description on the dataset page: https://huggingface.co/datasets/macwiatrak/bacbench-ppi-stringdb-protein-sequences.adaption-ebolavirus-protein-sequences
This dataset is a remastered version prepared using Adaption's Adaptive Data platform.
adaption-ebolavirus_protein_sequences
This dataset contains amino acid sequences for seven key proteins from various Ebola and Marburg virus genomes, including strains like Zaire, Sudan, and Tai Forest. Each entry provides the protein identifier, name, strain information, and the full sequence intended for generating embeddings using models like ESM-2 or ProtT5. The collection includes major… See the full description on the dataset page: https://huggingface.co/datasets/joduor/adaption-ebolavirus-protein-sequences.ebolavirus_protein_sequences_INITIAL
This dataset is a remastered version prepared using Adaption's Adaptive Data platform.
adaption-ebolavirus_protein_sequences
This dataset contains amino acid sequences for seven key proteins from various Ebola and Marburg virus genomes, including strains like Zaire, Sudan, and Tai Forest. Each entry provides the protein identifier, name, strain information, and the full sequence intended for generating embeddings using models like ESM-2 or ProtT5. The collection includes major… See the full description on the dataset page: https://huggingface.co/datasets/joduor/ebolavirus_protein_sequences_INITIAL.