datasets
Training and evaluation data, with the modality, task and licence stated up front. Listed live from the Hugging Face Hub.
spacr-example-annotate
spaCR — Annotate and Classify example data
Example input for the Annotate and Classify modules of
spaCR. It is the output of a Measure
run, so both modules can be exercised without segmenting or measuring anything
first.
What is here
Path
What it is
data/
2,341 single-cell PNG crops, foldered by phenotype
measurements.db
The measurements, plus png_list and the annotation tables
measurements/active_learning/
The model card from the first annotation… See the full description on the dataset page: https://huggingface.co/datasets/einarolafsson/spacr-example-annotate.spacr-example-make-masks
spaCR — Make Masks test data
Ten fluorescence microscopy fields of Toxoplasma gondii parasitophorous
vacuoles, each with a curated instance mask. This is the data behind the
Load test data… button on the Make Masks screen of
spaCR.
Where the images come from
All ten are the lab's own acquisitions. They come from the in-house part
(toxoplasma_pv) of spaCR's Toxoplasma vacuole training set, and each one's
row in that set's manifest is reproduced below and in… See the full description on the dataset page: https://huggingface.co/datasets/einarolafsson/spacr-example-make-masks.