datasets
Training and evaluation data, with the modality, task and licence stated up front. Listed live from the Hugging Face Hub.
jinyang-omentum-rmats-outlier-fixed-biology-results-v1
jinyang-omentum-rmats-outlier-fixed-biology-results-v1
Biology of the k=2 subgroups from jinyang-omentum-rmats-outlier-fixed-clustering (cluster1 n=116 / cluster2 n=50, 166 outlier-excluded omentum samples; expression analyses on the 160-sample TPM-labeled intersection). CAVEAT (stated plainly, not buried): cluster1/cluster2 are collinear with sequencing platform to within one sample -- cluster 2 contains ZERO NovaSeq-6000 samples and cluster 1 is 113/116 NovaSeq-6000. The… See the full description on the dataset page: https://huggingface.co/datasets/depinwang/jinyang-omentum-rmats-outlier-fixed-biology-results-v1.lsec-fcn2-splicing-viz-valerie-plot-v1
lsec-fcn2-splicing-viz-valerie-plot-v1
VALERIE v2.1.2 PlotPSI output for the FCN2 SE event across all 17 samples / 4 groups (1666 split LSEC cells). method=kw (Kruskal-Wallis; wilcox/t.test crash on >2 factor levels in v2.1.2). Per-group split cells with >=2 region reads (coverage proxy): F0=257,F2-3=470,F4=62,Healthy=726.
Dataset Info
Rows: 2
Columns: 6
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Description
image
Image(mode=None, decode=True)
PNG plot from… See the full description on the dataset page: https://huggingface.co/datasets/depinwang/lsec-fcn2-splicing-viz-valerie-plot-v1.jinyang-omentum-pds-subtype-biology-results-v1
jinyang-omentum-pds-subtype-biology-results-v1
Whole-cohort Omental k=2 NMF subtype biology (S1 n=118 / S2 n=50, 168 samples; expression analyses on the 162-sample TPM-labeled intersection). Figures: survival-anchor KM, splicing/expression volcanos, ORA dot plots (6), ssGSEA splicing heatmap, per-gene splicing-vs-expression concordance scatter.
Dataset Info
Rows: 11
Columns: 2
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figure_name
Value('string')… See the full description on the dataset page: https://huggingface.co/datasets/depinwang/jinyang-omentum-pds-subtype-biology-results-v1.lsec-lonp2-splicing-viz-valerie-plot-v1
lsec-lonp2-splicing-viz-valerie-plot-v1
VALERIE v2.1.2 PlotPSI output for the LONP2 SE event, HC vs F2-3 (315 split LSEC cells). method=wilcox (2 groups). Per-group split cells with >=2 region reads (coverage proxy): Healthy=87,F2-3=45. KNOWN-NULL LOCUS — see event description. This is a negative-control companion to lsec-fcn2-splicing-viz-valerie-plot-v1, not a positive finding: expect near-uniform PSI=1.00 and a flat/non-significant p-track.
Dataset Info
Rows:… See the full description on the dataset page: https://huggingface.co/datasets/depinwang/lsec-lonp2-splicing-viz-valerie-plot-v1.lsec-biomarkers-splicing-viz-mt1g-plot-v1
lsec-biomarkers-splicing-viz-mt1g-plot-v1
VALERIE v2.1.2 PlotPSI output for the MT1G event (851 split LSEC cells, cell.types=Healthy,F0,F2-3,F4, method=kw). Per-group split cells with >=2 region reads (coverage proxy): Healthy=410,F0=211,F2-3=219,F4=5.
Dataset Info
Rows: 2
Columns: 6
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Column
Type
Description
image
Image(mode=None, decode=True)
PNG plot from PlotPSI: per-cell coverage-ratio PSI heatmap, mean PSI +/- bootstrap CI… See the full description on the dataset page: https://huggingface.co/datasets/depinwang/lsec-biomarkers-splicing-viz-mt1g-plot-v1.lsec-biomarkers-splicing-viz-stab2-plot-v1
lsec-biomarkers-splicing-viz-stab2-plot-v1
VALERIE v2.1.2 PlotPSI output for the STAB2 event (1929 split LSEC cells, cell.types=Healthy,F0,F2-3,F4, method=kw). Per-group split cells with >=2 region reads (coverage proxy): Healthy=779,F0=426,F2-3=478,F4=166.
Dataset Info
Rows: 2
Columns: 6
Columns
Column
Type
Description
image
Image(mode=None, decode=True)
PNG plot from PlotPSI: per-cell coverage-ratio PSI heatmap, mean PSI +/- bootstrap… See the full description on the dataset page: https://huggingface.co/datasets/depinwang/lsec-biomarkers-splicing-viz-stab2-plot-v1.